Sphingomonas paucimobilis and Similar Organisms

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Sphingomonas paucimobilis and Similar Organisms

Organisms to Be Considered

Current Name Previous Name
Acidovorax facilis Pseudomonas facilis
CDC group IIc  
CDC group IIe  
CDC group IIh  
CDC group IIi  
CDC group O-1  
CDC group O-2  
CDC group O-3  
Sphingobacterium mizutaii Flavobacterium mizutaii
Sphingobacterium multivorum Flavobacterium multivorum, CDC IIk-2
Sphingobacterium spiritivorum Flavobacterium spiritivorum, Flavobacterium yabuuchiae, Sphingobacterium versatilis, CDC IIk-3
Sphingomonas parapaucimobilis  
Sphingomonas paucimobilis Pseudomonas paucimobilis, CDC IIk-1

Epidemiology, Spectrum of Disease, and Antimicrobial Therapy

As demonstrated in Table 27-1, these organisms are rarely or only occasionally isolated from human materials and have limited roles as agents of infection. Because they are infrequently encountered in the clinical setting, little information is available on their epidemiology, ability to cause human infections, and potential for antimicrobial resistance. For example, even though O-1 and O-2 organisms have been submitted to the Centers for Disease Control and Prevention (CDC) after being isolated from clinical materials such as blood, cerebrospinal fluid (CSF), wounds, and pleural fluid, their natural habitat is unknown. The genus Sphingobacterium is ubiquitous in nature, and Sphingomonas spp. are known for their waterborne nature. Some of these groups are present in hospital settings, such as hospital water supplies. When the organisms discussed in this chapter are encountered in clinical specimens, their clinical significance and potential as contaminants should be considered; human infections have been documented, so care must be taken to determine whether these organisms are infectious agents or contaminants.

TABLE 27-1

Epidemiology, Spectrum of Disease, and Antimicrobial Therapy

Organism Epidemiology Disease Spectrum Antimicrobial Therapy
Acidovorax facilis A. facilis is found in soil and has been used as a soil additive to improve plant growth in areas of agriculture and horticulture. Commonly found in soil. Rarely found in clinical material and not substantiated as a cause of human infections. No guidelines; little is known about antimicrobial resistance potential.
Disk diffusion testing cannot be performed.
CDC group IIc
CDC group IIe
CDC group IIh
CDC group IIi
CDC groups IIc, IIe, IIh, and IIi are found in soil, plants, foodstuffs, and water, including moist areas in hospitals. Not part of human flora. Rarely found in clinical material and rarely substantiated as a cause of human infections; have been isolated from blood, eyes, and wounds. No guidelines; little is known about antimicrobial resistance potential
CDC group O-1
CDC group O-2
CDC group O-3
Epidemiology is unknown. Rarely found in clinical material and rarely implicated as a cause of human infections. CDC group O-3 has been isolated from bone, blood, lung, and lymph node tissue. No guidelines; one report indicates susceptibility of CDC group O-3 to aminoglycosides, imipenem, trimethoprim-sulfamethoxazole, and chloramphenicol (however, the breakpoints used were based on those for the Enterobacteriaceae family).
Sphingobacterium mizutaii
S. multivorum
S. spiritivorum
Sphingobacteria are ubiquitous in nature. Rarely involved in human infections. S. mizutaii has been associated with blood, cerebrospinal fluid, and wound infections; S. multivorum with blood and wound infections; and S. spiritivorum with blood and urine infections. Literature references report the following susceptibilities:
S. mizutaii—erythromycin, trimethoprim-sulfamethoxazole, and pefloxacin.
S. multivorum—amikacin, gentamicin, aztreonam, cefepime, cefotaxime, ceftazidime, meropenem, piperacillin, piperacillin/tazobactam, and chloramphenicol.
S. spiritivorum—amikacin, gentamicin, aztreonam, cefepime, cefotaxime, chloramphenicol.
Sphingomonas paucimobilis
S. parapaucimobilis
S. paucimobilis inhabits environmental niches and is known especially as a waterborne organism that can exist in hospital water systems. Not part of human flora. Mode of transmission is uncertain but probably involves patient exposure to contaminated medical devices or solutions. S. paucimobilis virulence factors are unknown. It has been implicated in community- and hospital-acquired infections, specifically in blood and urine infections. No definitive guidelines; potentially active agents include trimethoprim-sulfamethoxazole, chloramphenicol, ciprofloxacin, and aminoglycosides; resistance to beta-lactams is known, but validated susceptibility testing methods do not exist.

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Laboratory Diagnosis

Specimen Collection and Transport

No special considerations are required for specimen collection and transport of the organisms discussed in this chapter. Refer to Table 5-1 for general information on specimen collection and transport.

Cultivation

Media of Choice

Sphingomonas spp., Sphingobacterium spp., Acidovorax facilis, and all CDC groups considered in this chapter grow well on routine laboratory media, such as 5% sheep blood and chocolate agars; however, most fail to grow on MacConkey agar. They usually grow well in thioglycollate and brain-heart infusion broths and in broths used in blood culture systems.

Colonial Appearance

Table 27-2 describes the colonial appearance and distinguishing characteristics (e.g., pigment) of each organism on 5% sheep blood agar. When these organisms do grow on MacConkey agar, they appear as lactose nonfermenters.

TABLE 27-2

Colonial Appearance and Characteristics

Organism Medium Appearance
Acidovorax facilis BA No distinctive appearance
CDC group IIc BA No distinctive appearance but colonies sticky
CDC group IIe BA No distinctive appearance
CDC group IIh BA No distinctive appearance
CDC group IIi BA No distinctive appearance
CDC group O-1, O-2, O-3 BA Yellow pigment present in O-1 and O-2 but not in O-3
Sphingobacterium spp. BA Yellow pigment present in S. mizutaii
Sphingomonas paucimobilis
S. parapaucimobilis
BA Small, circular, smooth, convex; bright yellow growth pigment

BA, 5% sheep blood agar.

Approach to Identification

The ability of many commercial identification systems to identify accurately the organisms discussed in this chapter may be limited or uncertain. Tables 27-3 through 27-6 show some biochemical tests that are helpful for presumptive differentiation among the various organisms in this group.

TABLE 27-3

Key Biochemical and Physiologic Characteristics

Organism Insoluble Pigment Glucose Oxidized Xylose Oxidized Sucrose Oxidized Esculin Hydrolysis Motility
Acidovorax facilis + (+) +
CDC group IIc Tan or buff + + + nm
CDC group IIe + nm
CDC group IIh + + nm
CDC group IIi Yellow + + + + nm
CDC group O-2 Yellow to orange v + v v*
Sphingobacterium mizutaii v + (+) + + nm
Sphingomonas spp. Yellow + + + + +§

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nm, Nonmotile; v, variable; +, >90% strains positive; −, >90% strains negative; (+), delayed.

*Only 20% are motile; motility is only apparent upon wet mount or flagellar staining.

Yellow pigment production may be enhanced by incubation at room temperature.

Includes S. paucimobilis and S. parapaucimobilis.

§Usually nonmotile in motility medium, but motility is present on wet mount.

Data compiled from Daneshvar MI, Hill B, Hollis DG et al: CDC group O-3: phenotypic characteristics, fatty acid composition, isoprenoid quinone content, and in vitro antimicrobic susceptibilities of an unusual gram-negative bacterium isolated from clinical specimens, J Clin Microbiol 36:1674, 1998; Hollis DG, Moss CW, Daneshvar MI, Wallace-Shewmaker PL: CDC group IIc phenotypic characteristics, fatty acid composition, and isoprenoid quinone content, J Clin Microbiol 34:2322, 1996; and Weyant RS, Moss CW, Weaver RE et al, editors: Identification of unusual pathogenic gram-negative aerobic and facultatively anaerobic bacteria, ed 2, Baltimore, 1996, Williams & Wilkins.

TABLE 27-4

Specific Biochemical Characteristics for Differentiation of CDC groups IIc, IIe, and IIh*

Biochemical Test CDC Group IIc
(n = 20)
CDC Group IIe
(n = 18)
CDC Group IIh
(n = 21)
Growth on MacConkey agar 0 7 0
Oxidase 100 88 100
Acid from OF glucose 100 100 100
Acid from OF xylose 0 0 0
Acid from OF mannitol 0 0 0
Acid from OF lactose 0 0 0
Acid from OF sucrose 100 0 0
Acid from OF maltose 100 100 100
Catalase 100 88 100
Christensen urea 0 0 0
Nitrate reduction 90 0 0
Indole 100 100 100
Simmons citrate 0 0 0
Motility 0 0 0
Gelatin hydrolysis 20 0 7
Esculin hydrolysis 100 0 100
Growth at 25°C 100 100 100
Growth at 35°C 100 100 100
Growth at 42°C 5 0 5

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*Results indicate percent positive after 48 hours.

Data compiled from Hollis DG, Moss CW, Daneshvar MI, Wallace-Shewmaker PL: CDC group IIc phenotypic characteristics, fatty acid composition, and isoprenoid quinone content, J Clin Microbiol 34:2322, 1996.

TABLE 27-5

Specific Biochemical Characteristics for Differentiation of the Sphingobacterium spp.

Biochemical Test S. multivorum S. spiritivorum S. mizutaii
Oxidation of ethanol Negative Positive Negative
Oxidation of mannitol Negative Positive Negative
Oxidation of rhamnose Negative Positive Positive
Christensen urease Positive Positive Negative*
DNase Negative Positive ND
Susceptibility to polymyxin B Resistant Resistant Resistant
Indole Negative Negative Negative

image

*Reported positive: 20%.

Reported positive: 40%.

Not determined. Some microbiology texts classify S. mizutaii as DNase positive, and some major literature references identify it as DNase negative.

Data compiled from Freney J, Hansen W, Ploton C et al: Septicemia caused by Sphingobacterium multivorum. J Clin Microbiol 25:1126, 1987.

TABLE 27-6

Specific Biochemical Characteristics for Differentiation of the Sphingomonas spp.

Biochemical Test S. paucimobilis S. parapaucimobilis
Oxidation of glucose Positive Positive
Oxidation of xylose Positive Positive
Oxidation of maltose Positive Positive
Esculin hydrolysis Positive Positive
Motility Positive* Positive
Indole Negative Negative
Susceptibility to polymyxin B Susceptible Variable
Hydrogen sulfide (H2S) (lead acetate paper suspended over KIA) Negative Positive
Citrate Negative Positive
DNase Positive Negative

H2S, Hydrogen sulfide; KIA, Kligler iron agar.

*Motility positive by wet mount or in motility medium incubated at 18° to 22°C, but organism is nonmotile when incubated at 37°C.

Data compiled from Winn WC, Allen SD, Janda WM et al: Koneman’s color atlas and textbook of diagnostic microbiology, ed 6, Philadelphia, 2006, Lippincott Williams & Wilkins.

Comments Regarding Specific Organisms

CDC groups IIc, IIe, IIh, IIi, O-1, O-2, and O-3.

CDC groups IIc, IIe, IIh, IIi, O-1, and O-2 are short, straight rods that may appear as “II-forms” (i.e., bacteria with thickened ends and thin centers). The phenotypic characteristics of CDC group IIc are most similar to those of CDC groups IIe and IIh, the major difference being that CDC group IIc produces acid from sucrose, hydrolyzes esculin, and usually reduces nitrate. Strains of CDC groups IIe and IIh are similar to Empedobacter brevis (see Chapter 26) in that they oxidize glucose and maltose and produce indole. CDC group IIi resembles S. multivorum but produces indole. S. parapaucimobilis resembles CDC group O-1 in that both are motile, esculin positive, and positive for hydrogen sulfide (H2S) in lead acetate; however, S. parapaucimobilis oxidizes more carbohydrates (CDC O-1 is weakly positive in OF glucose and negative in OF xylose, maltose, and mannitol).

CDC groups O-1 and O-2 are similar in that they are motile, oxidase-positive, esculin-positive, gram-negative rods that grow with yellow pigment and do not grow on MacConkey agar. CDC groups O-1 and O-2 have been isolated from clinical sources; antimicrobial susceptibility testing on these organisms has not been reported. CDC group O-2 does not oxidize xylose, mannitol, or lactose; this can help distinguish it from the other yellow-pigmented organisms growing on blood agar discussed in this chapter.

CDC O-3 bacteria, which are predominantly curved rods, do not produce yellow pigment. They are motile by a single polar flagellum. They grow well on a Campylobacter-selective medium and may be misidentified as a Campylobacter sp. CDC group O-3 are aerobic, glucose-oxidizing organisms that utilize xylose, sucrose, and maltose. They do not grow on MacConkey agar. They are oxidase positive, hydrolyze esculin, and are negative for urease, indole, nitrate, and gelatin. Key characteristics of the CDC groups are shown in Tables 27-3 and 27-4. CDC O-3 has been reported as susceptible to aminoglycosides, imipenem, chloramphenicol, and trimethoprim-sulfamethoxazole and resistant to beta-lactam antimicrobials.

Sphingobacterium multivorum.

S. multivorum is yellow pigmented, oxidase positive, and esculin positive. It is OF glucose positive; it does not produce acid from mannitol, ethanol, or rhamnose; and it is Christensen urease positive. This bacterium grows on blood agar plate (BAP), Mueller-Hinton agar, Burkholderia cepacia–selective agar (BCSA), and MacConkey agar. Key characteristics are shown in Table 27-5. These organisms are ubiquitous in nature and rarely associated with serious infection; however, cases of septicemia and peritonitis have been reported. This bacterium is nonmotile and resistant to polymyxin B, characteristics that distinguish it from S. paucimobilis. Susceptibility to amikacin, gentamicin, aztreonam, cefepime, cefotaxime, ceftazidime, meropenem, piperacillin, and chloramphenicol has been reported in a small study of eight isolates.

Sphingomonas paucimobilis.

S. paucimobilis is a medium-size, straight, gram-negative rod with a single polar flagellum; growth requires at least 48 hours’ incubation on sheep blood agar (Figure 27-1). Optimal growth occurs at 30°C in 5% CO2 or ambient air; it does grow at 37°C but not at 42°C. It grows as a deep yellow colony on tryptic soy and blood agars. It is obligately aerobic, grows in broth (e.g., brain-heart infusion, thioglycollate, blood culture media), and does not grow on MacConkey agar (90% do not grow; 10% grow as lactose nonfermenters). S. paucimobilis oxidatively utilizes glucose, xylose, and sucrose. Biochemical test results of interest include the following: esculin hydrolysis positive; motile by wet mount or in motility medium when incubated at 18° to 22°C (nonmotile when incubated at 37°C); oxidase positive (90% to 94% positive); catalase positive; urease negative; and indole negative. S. paucimobilis is susceptible to polymyxin B, a trait that distinguishes it from Sphingobacterium spp. Key characteristics are shown in Table 27-6.

Antimicrobial susceptibility testing indicates that S. paucimobilis is susceptible to tetracycline, chloramphenicol, trimethoprim-sulfamethoxazole, and aminoglycosides. Susceptibility to vancomycin has been noted when the organism is grown on sheep blood agar with a vancomycin disk (30 µg). S. paucimobilis is ubiquitous in soil and water and has been isolated environmentally from swimming pools, hospital equipment, and water and laboratory supplies. It has been associated with human infections and found in a variety of clinical specimens, specifically, peritonitis associated with wound infections (chronic ambulatory peritoneal dialysis, leg ulcer, empyema, splenic abscess, brain abscess), blood cultures, and CSF, urine, vaginal, and cervical samples. Recent literature indicates that S. paucimobilis is usually regarded as having minor clinical significance; however, community-acquired infection, diabetes mellitus, and alcoholism have been identified as significant risk factors for primary bacteremia. A retrospective study suggests that the prevalence of S. paucimobilis infection in humans seems to have increased in recent times, and although it has low virulence, infection can lead to septic shock, particularly in immunocompromised patients. Another report indicates that although this bacterium has low mortality associated with infection, it frequently causes complications in hospitalized patients.

Sphingomonas parapaucimobilis.

S. parapaucimobilis is similar to S. paucimobilis in many ways. It is a medium-size, straight, gram-negative rod that grows with a deep yellow pigment. It is obligately aerobic, motile, and does not grow on MacConkey agar. S. parapaucimobilis can be distinguished from S. paucimobilis by several characteristics. S. parapaucimobilis is H2S positive, as indicated by blackening of lead acetate paper suspended over Kligler iron agar (KIA); it is Simmons citrate positive (S. paucimobilis is negative); and it is negative for extracellular DNAse (S. paucimobilis is positive). Like S. paucimobilis, S. parapaucimobilis is acid in OF glucose, OF xylose, and OF maltose but negative in OF mannitol. It has been distinguished from Sphingobacterium spp. by its susceptibility to polymyxin B; however, S. parapaucimobilis is sometimes variable to polymyxin B. Key characteristics are shown in Table 27-6. Antimicrobial susceptibility testing indicates that S. parapaucimobilis displays variable resistance but is usually susceptible to tetracycline, chloramphenicol, sulfamethoxazole, aminoglycosides, third-generation cephalosporins, and fluoroquinolone. S. parapaucimobilis has been associated with human infections; specifically, it has been isolated from sputum, urine, and the vagina.

Prevention

Because these organisms are rarely implicated or only recently have been identified in human infections, no vaccines or prophylactic measures are available.

Case Study 27-1

A 16-year-old patient with acute lymphoblastic leukemia presents to his oncologist with pain and swelling of the left knee. He recently received a course of chemotherapy and radiotherapy, and he is taking oral steroids. Straw-colored fluid with 2+ WBC is aspirated from his knee. No microorganisms are seen on the smear, and none grow in culture. Unfortunately, only a few drops of the fluid are cultured on plate media. Over the next 6 months, the patient is in and out of the hospital, receiving antibiotics and having more cultures done, with no positive findings to explain his pain and swelling. He is admitted to the hospital, where an arthroscopic procedure is performed to evaluate the problem. Widespread synovitis is seen. Culture samples obtained from the surgery grow a yellow-pigmented, gram-negative rod on blood agar, but no growth is observed on MacConkey agar. Indole and urease testing are negative, but the oxidase test and wet mount motility are positive. The bacterium is identified as Sphingomonas paucimobilis. The patient is treated with a 6-week course of intravenous amikacin and ceftazidime. Despite the effectiveness of treatment, the patient is left with residual knee pain and stiffness because of articular cartilage destruction.

From Charity R, Foukas A: Osteomyelitis and secondary septic arthritis caused by Sphingomonas paucimobilis, Infection 33:93, 2005.

Case Study 27-2

A 20-month-old girl is diagnosed with cystic fibrosis at the age of 6 months. She is taken to the hospital on her second day of respiratory difficulty and presents with cough, abundant mucus expectoration, and a temperature of 37.9°C. Because she has a history of Pseudomonas aeruginosa infections, treatment is started with ceftazidime and amikacin. Bronchial aspirates are obtained for culture, plated on blood, chocolate, and MacConkey agars, and incubated (37°C, 48 hours). A medium specific for isolation of slow-growing Burkholderia organisms also is inoculated and incubated appropriately. Abundant growth of oxidase-positive colonies that are nonmotile, catalase-positive, gram-negative rods is identified as Sphingobacterium multivorum by means of a Vitek GNI card and API 20NE.

Definitive identification is provided by biochemical tests that show the following positive results: growth on MacConkey agar; urease; esculin hydrolysis; beta-D-galactosidase production; assimilation of glucose, arabinose, mannose, N-acetyl-glucosamine, and maltose; and acidification of glucose, lactose, maltose, sucrose, and xylose. Negative results are identified for the following: motility at 23°C (room temperature), 37°C, and 42°C; nitrate and nitrite reduction; indole production; arginine dihydrolase; lysine and ornithine decarboxylase; gelatin hydrolysis; hydrogen sulfide production; and assimilation of mannitol, gluconate, malate, and citrate.

Antimicrobial susceptibility testing identifies susceptibility to carbenicillin, ceftazidime, ceftriaxone, cefuroxime, chloramphenicol, azlocillin, cefotaxime, ticarcillin, ciprofloxacin, imipenem, piperacillin, and amikacin. Resistance to aztreonam, mezlocillin, gentamicin, tobramycin, and cotrimoxazole also is identified. A Burkholderia-specific medium shows no growth. The patient responds well to fluid and antimicrobial therapy and is discharged from the hospital.

From Reina J, Borrell N, Figuerola J: Sphingobacterium multivorum isolated from a patient with cystic fibrosis, Eur J Clin Microbiol Infect Dis 11:81, 1992.