Urinary tract infections

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36 Urinary tract infections

Key points

The term urinary tract infection (UTI) usually refers to the presence of organisms in the urinary tract together with symptoms, and sometimes signs, of inflammation. However, it is more precise to use one of the following terms.

Epidemiology

UTIs are among the most common infectious diseases occurring in either the community or health care setting. Uncomplicated UTIs typically occur in healthy adult non-pregnant women, whereas complicated UTIs are found in either sex and at any age, frequently associated with structural or functional urinary tract abnormalities.

Pathogenesis

There are three possible routes by which organisms might reach the urinary tract: the ascending, blood-borne and lymphatic routes. There is little evidence for the last route in humans. Blood-borne spread to the kidney can occur in bacteraemic illnesses, most notably Staphylococcus aureus septicaemia, but by far the most frequent route is the ascending route.

In women, UTI is preceded by colonisation of the vagina, perineum and periurethral area by the pathogen, which then ascends into the bladder via the urethra. Uropathogens colonise the urethral opening of men and women. That the urethra in women is shorter than in men and the urethral meatus is closer to the anus are probably important factors in explaining the preponderance of UTI in females. Further, sexual intercourse appears to be important in forcing bacteria into the female bladder, and this risk is increased by the use of diaphragms and spermicides, which have both been shown to increase E. coli growth in the vagina. Whether circumcision reduces the risk of infection in adult men is not known, but it markedly reduces the risk of UTI in male infants.

Clinical manifestations

Most UTIs are asymptomatic. Symptoms, when they do occur, are principally the result of irritation of the bladder and urethral mucosa. However, the clinical features of UTI are extremely variable and to some extent depend on the age of the patient.

Investigations

The key to successful laboratory diagnosis of UTI lies in obtaining an uncontaminated urine sample for microscopy and culture. Contaminating bacteria can arise from skin, vaginal flora in women and penile flora in men. Patients therefore need to be instructed in how to produce a midstream urine sample (MSU). For women, this requires careful cleansing of the perineum and external genitalia with soap and water. Uncircumcised men should retract the foreskin. This is followed by a controlled micturition in which about 20 mL of urine from only the middle portion of the stream is collected, the initial and final components being voided into the toilet or bedpan. Understandably, this is not always possible and many so-called MSUs are in fact clean-catch specimens in which the whole urine volume is collected into a sterile receptacle and an aliquot transferred into a specimen pot for submission to the laboratory. These are more likely to contain urethral contaminants. In very young children, special collection pads for use inside nappies or stick-on bags are useful ways of obtaining a urine sample. Occasionally, in-and-out diagnostic catheterisation or even suprapubic aspiration directly from the bladder is necessary.

For primary care doctors located some distance from a laboratory, transport of specimens is a problem. Specimens must reach the laboratory within 1–2 h or should be refrigerated; otherwise, any bacteria in the specimen will multiply and might give rise to a false-positive result. Methods of overcoming bacterial multiplication in urine include the addition of boric acid to the container and the use of dip-slides, in which an agar-coated paddle is dipped into the urine and submitted directly to the laboratory for incubation. Both of these alternatives have difficulties. For the boric acid technique, it is important that the correct amount of urine is added to the container to achieve the appropriate concentration of boric acid (1.8%, w/v), as the chemical has significant antibacterial activity when more concentrated. When the dip-slide is used, no specimen is available on which to do cell counts.

Concerns about the relative expense and slow turn-around time of urine microscopy and culture have stimulated interest in alternative diagnostic strategies. Some advocate a policy of empirical antimicrobial treatment in the first instance, and reserve investigation only for those cases that do not respond. Others are in favour of using cheaper, more convenient screening tests, for example, urine dipsticks. It is important to be aware that there is no rapid screening test that will reliably detect all UTIs. Urine microscopy and culture remain the standard by which other investigations are measured.

Dipsticks

Dipsticks for rapid near-patient testing for urinary blood, protein, nitrites and leucocyte esterase are usually used, although there are concerns that these are reliable only when applied to fresh urine samples tested at the point of care. Assessment of colour changes on dipsticks can be subjective and automated reading systems have been developed to assist interpretation. Generally, the negative predictive value is better than the positive predictive value, so their preferred use is as screening tests to identify those specimens which are least likely to be infected and which therefore do not require culture. A perfectly valid alternative is just to hold the specimen up to the light: specimens that are visibly clear are very likely to be sterile.

The leucocyte esterase test detects enzyme released from leucocytes in urine and is ∼︀90% sensitive at detecting white blood cell counts of >10 mm−3. It will be positive even if the cells have been destroyed due to delays in transport to a laboratory. However, vitamin C and antibiotics in the urine such as cephalosporins, gentamicin and nitrofurantoin may interfere with the reaction. Although the presence of leucocytes is common in UTIs, it may also occur in other conditions. Particularly in children, white blood cells can be present for many reasons, including fever alone.

The nitrite test (also called the Griess test) detects urinary nitrite made by bacteria that can convert excreted dietary nitrate used as a food preservative to nitrite. Although the coliform bacteria that commonly cause UTI can be detected in this way, some organisms cannot, for example, enterococci, group B streptococci, Pseudomonas, because they do not contain the converting enzyme. In addition, the test depends on sufficient nitrate in the diet and on allowing enough time, at least 4 h, for the chemical conversion to occur in the urine. Performance of the dipstick test is generally less diagnostic in infants and younger children than in the older age groups, and this may relate in part to the small capacity and frequent emptying of the infant bladder, resulting in lower numbers of organisms and less pyuria. The use of dipsticks alone for the diagnosis of UTI is not recommended for children under 3 years of age (NICE, 2007). The inability of the test to detect group B streptococci also makes it a relatively inappropriate test for screening for asymptomatic bacteriuria in pregnancy, in which this organism assumes particular importance as a cause of neonatal sepsis.

Although a negative dipstick test for leucocytes and nitrites can quite accurately predict absence of infection, their absence does not necessarily predict non-response to antibiotic treatment and further research is needed on this (Richards et al., 2005). Some experts consider that detection of nitrites in a symptomatic patient should prompt initiation of treatment (Gopal Rao and Patel, 2009). An algorithm for the use of dipstick testing in uncomplicated UTI in adult women is set out in Fig. 36.1.

There are other rapid methods for detecting bacteriuria, such as tests for interleukin-8, and no shortage of data concerning their sensitivity and specificity, but the optimal strategy will always be a compromise between accuracy, speed, convenience and cost, and is likely to be very different for different settings and populations.

Treatment

Although many, and perhaps most, cases clear spontaneously given time, symptomatic UTI usually merits antibiotic treatment to eradicate both symptoms and pathogen. Asymptomatic bacteriuria may or may not need treatment depending upon the circumstances of the individual case. Bacteriuria in children and in pregnant women requires treatment, as does bacteriuria present when surgical manipulation of the urinary tract is to be undertaken, because of the potential complications. On the other hand, in non-pregnant, asymptomatic bacteriuric adults without any obstructive lesion, screening and treatment are probably unwarranted in most circumstances (Nicolle et al., 2005). Unnecessary treatment will lead to selection of resistant organisms and puts patients at risk of adverse drug effects including bowel infection with Clostridium difficile, which has been particularly associated with the use of cephalosporins and quinolones. A number of common management problems are summarised in Table 36.1.

Table 36.1 Common management problems with urinary tract infections (UTI)

Problem Comments
Asymptomatic infection Asymptomatic bacteriuria should be treated where there is a risk of serious consequences (e.g. in childhood), where there is renal scarring, and in pregnancy. Otherwise, treatment is not usually required
Catheter in situ, patient unwell Systemic symptoms may result from catheter-associated UTI, and should respond to antibiotics although the catheter is likely to remain colonised. Local symptoms such as urgency are more likely to reflect urethral irritation than infection
Catheter in situ, urine cloudy or smelly Unless the patient is systemically unwell, antibiotics are unlikely to achieve much and may give rise to resistance. Interventions of uncertain benefit include bladder wash-outs or a change of catheter
Penicillin allergy Clarify ‘allergy’: vomiting or diarrhoea are not allergic phenomena and do not contraindicate penicillins. Penicillin-induced rash is a contraindication to amoxicillin, but cephalosporins are likely to be tolerated. Penicillin-induced anaphylaxis suggests that all β-lactams should be avoided
Symptoms of UTI but no bacteriuria Exclude urethritis, candidosis, etc. Otherwise likely to be urethral syndrome, which usually responds to conventional antibiotics
Bacteriuria but no pyuria May suggest contamination. However, pyuria is not invariable in UTI and may be absent particularly in pyelonephritis, pregnancy, neonates, the elderly, and Proteus infections
Pyuria but no bacteriuria Usually, the patient has started antibiotics before taking the specimen. Rarely, a feature of unusual infections (e.g. anaerobes, tuberculosis, etc.)
Urine grows Candida Usually reflects perineal candidosis and contamination. True candiduria is rare, and may reflect renal candidosis or systemic infection with candidaemia
Urine grows two or more organisms Mixed UTI is unusual – mixed cultures are likely to reflect perineal contamination. A repeat should be sent unless this is impractical (e.g. frail elderly patients), in which case best-guess treatment should be instituted if clinically indicated
Symptoms recur May represent relapse or reinfection. A repeat urine culture should be performed shortly after treatment

Antimicrobial chemotherapy

The principles of antimicrobial treatment of UTI are the same as those of the treatment of any other infection: from a group of suitable drugs chosen on the basis of efficacy, safety and cost, select the agent with the narrowest possible spectrum and administer it for the shortest possible time. In general, there is no evidence that bactericidal antibiotics are superior to bacteriostatic agents in treating UTI, except perhaps in relapsing infections. Blood levels of antibiotics appear to be unimportant in the treatment of lower UTI; what matters is the concentration in the urine. However, blood levels probably are important in treating pyelonephritis, which may progress to bacteraemia. Drugs suitable for the oral treatment of cystitis include trimethoprim, the β-lactams, particularly amoxicillin, co-amoxiclav and cefalexin, fluoroquinolones such as ciprofloxacin, norfloxacin and ofloxacin, and nitrofurantoin. Where intravenous administration is required, suitable agents include β-lactams such as amoxicillin and cefuroxime, quinolones, and aminoglycosides such as gentamicin.

In renal failure, it may be difficult to achieve adequate therapeutic concentrations of some drugs in the urine, particularly nitrofurantoin and quinolones. Further, accumulation and toxicity may complicate the use of aminoglycosides. Penicillins and cephalosporins attain satisfactory concentrations and are relatively non-toxic, and are therefore the agents of choice for treating UTI in the presence of renal failure.

Antibiotic resistance

Antimicrobial resistance is a major concern worldwide. The susceptibility profile of commonly isolated uropathogens has been constantly changing. Coliform bacteria of many species that produce extended-spectrum β-lactamase (ESBL) enzymes have emerged in recent years, particularly as a cause of UTI in community-based patients. Before 2003, most ESBL-producing bacteria were hospital acquired and occurred in specialist units.

ESBL-producing bacteria are clinically important as they produce enzymes that destroy almost all commonly used β-lactams except the carbapenem class, rendering most penicillins and cephalosporins largely useless in clinical practice. Some ESBL enzymes can be inhibited by clavulanic acid, and combinations of an agent containing it, for example, co-amoxiclav, with other oral broad-spectrum β-lactams, for example, cefixime or cefpodoxime, have been used to treat UTIs caused by ESBL-producing E. coli (Livermore et al., 2008). These combinations are unlicensed and their effectiveness is variable.

In addition, many ESBL-producing bacteria are multiresistant to non-β-lactam antibiotics too, such as quinolones, aminoglycosides and trimethoprim, narrowing treatment options. ESBL-E. coli is often pathogenic and a high proportion of infections result in bacteraemia with resultant mortality (Tumbarello et al., 2007). Some strains cause outbreaks both in hospitals and in the community. Empirical treatment strategies may need to be reviewed in settings where ESBL-producing strains are prevalent, and it may be considered appropriate to use a carbapenem in seriously ill patients until an infection has been proved not to involve an ESBL producer.

Recently, even more resistant strains have emerged in India and Pakistan, with subsequent transfer to the UK, that carry a gene for a novel New Delhi metallo-β-lactamase-1 that also confers resistance to carbapenems. This blaNDM-1 gene was mostly found among E. coli and Klebsiella, which were highly resistant to all antibiotics except to colistin and tigecycline, which is not effective for UTI as it is chemically unstable in the urinary tract (Kumarasamy et al., 2010).

Uncomplicated lower UTI

The problem with empirical treatment is that over 10% of the healthy adult female population would receive an antibiotic each year. The use of antibiotics to this extent in the population has implications for antibiotic resistance, a major focus of public health policy worldwide. This highlights the tension between maximising the benefit for individuals and minimising antibiotic resistance at a population level. Strategies have included diagnostic algorithms to predict more precisely who has a UTI, as well as issuing delayed prescriptions (Mangin, 2010).

Therapeutic decisions should be based on accurate, up-to-date antimicrobial susceptibility patterns. Data have been published from a European multicentre survey that examined the prevalence and antimicrobial susceptibility of community-acquired pathogens causing uncomplicated UTI in women (Kahlmeter, 2003). Among almost 2500 E. coli isolates, the resistance rates were 30% for amoxicillin, 15% for trimethoprim, 3.4% for co-amoxiclav, 2.3% for ciprofloxacin, 2.1% for cefadroxil and 1.2% for nitrofurantoin. These figures are lower than most routine laboratory data would suggest, but it should be remembered that the experience of diagnostic laboratories is likely to be biased by the overrepresentation of specimens from patients in whom empirical treatment has already failed. It is important to be aware of local variations in sensitivity pattern and to balance the risk of therapeutic failure against the cost of therapy.

Adults

The preference for best-guess therapy would seem to be a choice between trimethoprim, an oral cephalosporin such as cefalexin, co-amoxiclav or nitrofurantoin, with the proviso that therapy can be refined once sensitivities are available. The quinolones are best reserved for treatment failures and more difficult infections, since overuse of these important agents is likely to lead to an increase in resistance, as has been seen in countries such as Spain and Portugal. These recommendations are summarised in Table 36.2.

Other drugs that have been used for the treatment of UTI include co-trimoxazole, pivmecillinam, fosfomycin and earlier quinolones such as nalidixic acid. Co-trimoxazole is now recognised as a cause of bone marrow suppression and other haematological side effects, and in the UK, its use is greatly restricted. Further, despite superior activity in vitro, there is no convincing evidence that it is clinically superior to trimethoprim alone in the treatment of UTI caused by strains susceptible to both. Pivmecillinam is an oral pro-drug that is metabolised to mecillinam, a β-lactam agent with a particularly high affinity for Gram-negative penicillin-binding protein 2 and a low affinity for commonly encountered β-lactamases, and which therefore has theoretical advantages in the treatment of UTI. Pivmecillinam has been extensively used for cystitis in Scandinavian countries, where it does not seem to have led to the development of resistance, and for this reason, there have been calls for wider recognition of its usefulness, particularly for UTI caused by ESBL-producing strains. Fosfomycin is a broad-spectrum antibiotic with pharmacokinetic and pharmacodynamic properties that favour its use for treatment of cystitis with a single oral dose (Falagas et al., 2010). Finally, older quinolones such as nalidixic acid and cinoxacin were once widely used, but generally these agents have given ground to the more active fluorinated quinolones.

Catheter-associated infections

In most large hospitals, 10–15% of patients have an indwelling urinary catheter. Even with the very best catheter care, most will have infected urine after 10–14 days of catheterisation, although most of these infections will be asymptomatic. Antibiotic treatment will often appear to eradicate the infecting organism, but as long as the catheter remains in place, the organism, or another more resistant one, will quickly return. The principles of antibiotic therapy for catheter-associated UTI are therefore as follows:

Although it often prompts investigation, cloudy or strong-smelling urine is not per se an indication for antimicrobial therapy. In these situations, saline or antiseptic bladder wash-outs are often performed, but there is little evidence that they make a difference. Similarly, encrusted catheters are often changed on aesthetic grounds, but it is not known whether this reduces the likelihood of future symptoms.

Following catheter removal, bacteriuria may resolve spontaneously but more often it persists (typically for over 2 weeks in over half of patients) and may become symptomatic, though usually it will respond well to short-course treatment.

Bacteriuria of pregnancy

The prevalence of asymptomatic bacteriuria of pregnancy is about 5%, and about a third of these women proceed to develop acute pyelonephritis, with its attendant consequences for the health of both mother and pregnancy. Further, there is evidence that asymptomatic bacteriuria is associated with low birth weight, prematurity, hypertension and pre-eclampsia. For these reasons, it is recommended that screening be carried out, preferably by culture of a properly taken MSU, which should be repeated if positive for confirmation (National Collaborating Centre for Women’s and Children’s Health, 2003).

Rigorous meta-analysis of published trials has shown that antibiotic treatment of bacteriuria in pregnancy is effective at clearing bacteriuria, reducing the incidence of pyelonephritis and reducing the risk of preterm delivery. The drugs of choice are amoxicillin or cefalexin or nitrofurantoin, depending on the sensitivity profile of the infecting organism. Co-amoxiclav is cautioned in pregnancy because of lack of clinical experience in pregnant women. Trimethoprim is contraindicated (particularly in the first trimester) because of its theoretical risk of causing neural tube defects through folate antagonism. Nitrofurantoin should be avoided close to the time of expected delivery because of a risk of haemolysis in the baby. Ciprofloxacin is contraindicated because it may affect the growing joints. There are insufficient data concerning short-course therapy in pregnancy, and 7 days of treatment remains the standard. Patients should be followed up for the duration of the pregnancy to confirm cure and to ensure that any reinfection is promptly addressed.

Prevention and prophylaxis

There are a number of folklore and naturopathic recommendations for the prevention of UTI. Most of these have not been put to statistical study, but at least are unlikely to cause harm.

Children

In children, recurrence of UTI is common and the complications potentially hazardous, so many clinicians recommend antimicrobial prophylaxis following documented infection. The evidence in favour of this practice is not strong (Le Saux et al., 2000), and although it has been shown to reduce the incidence of bacteriuria, there is no good-quality evidence that prophylactic antibiotics are effective in preventing further symptomatic UTIs and they have not been shown to reduce the incidence of renal scarring complications, which are the most important outcomes for the patient (Mori et al., 2009). Further, important variables remain to be clarified, such as when to begin prophylaxis, which agent to use and when to stop. Recent guidelines have abandoned the time-honoured recommendation for routine antibiotic prophylaxis following a first infection, although it may be considered when there is recurrent UTI (NICE, 2007).

Although evidence is limited for some recommendations, there are many common-sense general measures aimed at reducing the risk of recurrence of infection, particularly in girls. They include advice on regular bladder emptying, cleaning the perineal/anal area from front to back after toilet, treating constipation adequately and avoiding both bubble baths and washing the hair in the bath.

Case studies

References

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