Introduction to the Immune System

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Chapter 1 Introduction to the Immune System

Summary

The immune system has evolved to protect us from pathogens. Intracellular pathogens infect individual cells (e.g. viruses), whereas extracellular pathogens divide outside cells in blood, tissues or the body cavities (e.g. many bacteria and parasites). These two kinds of pathogens require fundamentally different immune responses.

Phagocytes and lymphocytes are key mediators of immunity. Phagocytes internalize pathogens and degrade them. Lymphocytes (B and T cells) have receptors that recognize specific molecular components of pathogens and have specialized functions. B cells make antibodies (effective against extracellular pathogens), cytotoxic T lymphocytes (CTLs) kill virally infected cells, and helper T cells coordinate the immune response by direct cell–cell interactions and the release of cytokines.

Specificity and memory are two essential features of adaptive immune responses. As a result, the adaptive arm of the immune system (B and T lymphocytes) mounts a more effective response on second and subsequent encounters with a particular antigen. Non-adaptive (innate) immune responses (mediated, for example, by complement, phagocytes, and natural killer cells) do not alter on repeated exposure to an infectious agent.

Antigens are molecules that are recognized by receptors on lymphocytes. B cells usually recognize intact antigen molecules, whereas T cells recognize antigen fragments displayed on the surface of the body’s own cells.

An immune response occurs in two phases – antigen recognition and antigen eradication. In the first phase clonal selection involves recognition of antigen by particular clones of lymphocytes, leading to clonal expansion of specific clones of T and B cells and differentiation to effector and memory cells. In the effector phase, these lymphocytes coordinate an immune response, which eliminates the source of the antigen.

Vaccination depends on the specificity and memory of adaptive immunity. Vaccination is based on the key elements of adaptive immunity, namely specificity and memory. Memory cells allow the immune system to mount a much stronger and more rapid response on a second encounter with antigen.

Inflammation is a response to tissue damage. It allows antibodies, complement system molecules, and leukocytes to enter the tissue at the site of infection, resulting in phagocytosis and destruction of the pathogens. Lymphocytes are also required to recognize and destroy infected cells in the tissues.

The immune system may fail (immunopathology). This can be a result of immunodeficiency, hypersensitivity, or dysregulation leading to autoimmune diseases.

Normal immune reactions can be inconvenient in modern medicine, for example blood transfusion reactions and graft rejection.

The immune system is fundamental to survival, as it protects the body from pathogens, viruses, bacteria and parasites that cause disease. To do so, it has evolved a powerful collection of defense mechanisms to recognize and protect against potential invaders that would otherwise take advantage of the rich source of nutrients provided by the vertebrate host. At the same time it must differentiate between the individual’s own cells and those of harmful invading organisms while not attacking the beneficial commensal flora that inhabit the gut, skin, and other tissues.

This chapter provides an overview of the complex network of processes that form the immune system of higher vertebrates. It:

Over many millions of years, different types of immune defense, appropriate to the infecting pathogens, have evolved in different groups of organisms. In this book, we concentrate on the immune systems of mammals, especially humans. Because mammals are warm-blooded and long-lived, their immune systems have evolved particularly sophisticated systems for recognizing and destroying pathogens.

Many of the immune defenses that have evolved in other vertebrates (e.g. reptiles, amphibians) and other phyla (e.g. sponges, worms, insects) are also present in some form in mammals. Consequently the mammalian immune system consists of multi-layered, interlocking defense mechanisms that incorporate both primitive and recently evolved elements.

Cells and soluble mediators of the immune system

Cells of the immune system

Immune responses are mediated by a variety of cells and the soluble molecules that these cells secrete (Fig. 1.1). Although the leukocytes are central to all immune responses, other cells in the tissues also participate, by signaling to the lymphocytes and responding to the cytokines (soluble intercellular signaling molecules) released by T cells and macrophages.

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Fig. 1.1 Components of the immune system

The principal cells of the immune system and the mediators they produce are shown. Neutrophils, eosinophils, and basophils are collectively known as polymorphonuclear granulocytes (see Chapter 2). Cytotoxic cells include cytotoxic T lymphocytes (CTLs), natural killer (NK) cells (large granular lymphocytes [LGLs]), and eosinophils. Complement is made primarily by the liver, though there is some synthesis by mononuclear phagocytes. Note that each cell produces and secretes only a particular set of cytokines or inflammatory mediators.

Phagocytes internalize antigens and pathogens, and break them down

The most important long-lived phagocytic cells belong to the mononuclear phagocyte lineage. These cells are all derived from bone marrow stem cells, and their function is to engulf particles, including infectious agents, internalize them and destroy them. To do so, mononuclear phagocytes have surface receptors that allow them to recognize and bind to a wide variety of microbial macromolecules. They can then internalize and kill the micro-organism (Fig. 1.2). The process of phagocytosis describes the internalization (endocytosis) of large particles or microbes. The primitive responses of phagocytes are highly effective, and people with genetic defects in phagocytic cells often succumb to infections in infancy.

To intercept pathogens, mononuclear phagocytes are strategically placed where they will encounter them. For example, the Kupffer cells of the liver line the sinusoids along which blood flows, while the synovial A cells line the synovial cavity (Fig. 1.3).

Leukocytes of the mononuclear phagocyte lineage are called monocytes. These cells migrate from the blood into the tissues, where they develop into tissue macrophages.

Polymorphonuclear neutrophils (often just called neutrophils or PMNs) are another important group of phagocytes. Neutrophils constitute the majority of the blood leukocytes and develop from the same early precursors as monocytes and macrophages. Like monocytes, neutrophils migrate into tissues, particularly at sites of inflammation, However, neutrophils are short-lived cells that phagocytose material, destroy it, and then die within a few days.

B cells and T cells are responsible for the specific recognition of antigens

Adaptive immune responses are mediated by a specialized group of leukocytes, the lymphocytes, which include T and B lymphocytes (T cells and B cells) that specifically recognize foreign material or antigens. All lymphocytes are derived from bone marrow stem cells, but T cells then develop in the thymus, while B cells develop in the bone marrow (in adult mammals).

These two classes of lymphocytes carry out very different protective functions:

B cells express specific antigen receptors (immunoglobulin molecules) on their cell surface during their development and, when mature, secrete soluble immunoglobulin molecules (also known as antibodies) into the extracellular fluids. Each B cell is genetically programmed to express a surface receptor which is specific for a particular antigen. If a B cell binds to its specific antigen, it will multiply and differentiate into plasma cells, which produce large amounts of the antibody, but in a secreted form.

Secreted antibody molecules are large glycoproteins found in the blood and tissue fluids. Because secreted antibody molecules are a soluble version of the original receptor molecule (antibody), they bind to the same antigen that initially activated the B cells. Antibodies are an essential component of an immune response, and, when bound to their cognate antigens, they help phagocytes to take up antigens, a process called opsonization (from the Latin, opsono, ‘to prepare victuals for’).

There are several different types of T cell, and they have a variety of functions (Fig 1.4):

A fourth group of T-cells, regulatory T cells or Tregs, help to control the development of immune responses, and limit reactions against self tissues.

In every case, the T cells recognize antigens present on the surface of other cells using a specific receptor – the T cell antigen receptor (TCR) – which is quite distinct from, but related in structure to, the antigen receptor (antibody) on B cells. T cells generate their effects either by releasing soluble proteins, called cytokines, which signal to other cells, or by direct cell–cell interactions.

Soluble mediators of immunity

A wide variety of molecules are involved in the development of immune responses, including antibodies, opsonins and complement system molecules. The serum concentration of a number of these proteins increases rapidly during infection and they are therefore called acute phase proteins.

One example of an acute phase protein is C reactive protein (CRP), so-called because of its ability to bind to the C protein of pneumococci; it promotes the uptake of pneumococci by phagocytes. Molecules such as antibody and CRP that promote phagocytosis are said to act as opsonins.

Another important group of molecules that can act as opsonins are components of the complement system.

Complement proteins mediate phagocytosis, control inflammation and interact with antibodies in immune defense

The complement system, a key component of innate immunity, is a group of about 20 serum proteins whose overall function is the control of inflammation (Fig. 1.5). The components interact with each other, and with other elements of the immune system. For example:

Complement activation is a cascade reaction, where one component acts enzymatically on the next component in the cascade to generate an enzyme, which mediates the following step in the reaction sequence, and so on. (The blood clotting system also works as an enzyme cascade.)

Activation of the complement system generates protein molecules or peptide fragments, which have the following effects:

Cytokines signal between lymphocytes, phagocytes and other cells of the body

Cytokine is the general term for a large group of secreted molecules involved in signaling between cells during immune responses. All cytokines are proteins or glycoproteins. The different cytokines fall into a number of categories, and the principal subgroups of cytokines are outlined below.

Interferons (IFNs) are cytokines that are particularly important in limiting the spread of certain viral infections:

IFNs induce a state of antiviral resistance in uninfected cells (Fig. 1.6). They are produced very early in infection and are important in delaying the spread of a virus until the adaptive immune response has developed.

The interleukins (ILs) are a large group of cytokines produced mainly by T cells, though some are also produced by mononuclear phagocytes or by tissue cells. They have a variety of functions. Many interleukins cause other cells to divide and differentiate.

Colony stimulating factors (CSFs) are cytokines primarily involved in directing the division and differentiation of bone marrow stem cells, and the precursors of blood leukocytes. The CSFs partially control how many leukocytes of each type are released from the bone marrow. Some CSFs also promote subsequent differentiation of cells. For example, macrophage CSF (M-CSF) promotes the development of monocytes in bone marrow and macrophages in tissues.

Chemokines are a large group of chemotactic cytokines that direct the movement of leukocytes around the body, from the blood stream into the tissues and to the appropriate location within each tissue. Some chemokines also activate cells to carry out particular functions.

Tumor necrosis factors, TNFα and TNFβ, have a variety of functions, but are particularly important in mediating inflammation and cytotoxic reactions.

Transforming growth factors (e.g. TGFβ) are important in controlling cell division and tissue repair.

Each set of cells releases a particular blend of cytokines, depending on the type of cell and whether, and how, it has been activated. For example:

Some cytokines may be produced by all T cells, and some just by a specific subset.

Equally important is the expression of cytokine receptors. Only a cell that has the appropriate receptors can respond to a particular cytokine. For example the receptors for interferons are present on all nucleated cells in the body whereas other receptors are much more restricted in their distribution. In general, cytokine receptors are specific for their own individual cytokine, but this is not always so. In particular, many chemokine receptors respond to several different chemokines.

Immune responses to pathogens

Effective immune responses vary depending on the pathogen

The primary function of the immune system is to prevent entry of and/or to eliminate infectious agents and minimize the damage they cause, ensuring that most infections in normal individuals are short-lived and leave little permanent damage. Pathogens, however come in many different forms, with various modes of transmission and reproductive cycles, so the immune system has evolved different ways of responding to each of them.

The exterior defenses of the body (Fig. 1.7) present an effective barrier to most organisms. Very few infectious agents can penetrate intact skin. In contrast, many infectious agents gain access to the body across the epithelia of the gastrointestinal or urogenital tracts; others, such as the virus responsible for the common cold, infect the respiratory epithelium of nasopharynx and lung; a small number of infectious agents infect the body only if they enter the blood directly (e.g. malaria and sleeping sickness).

Once inside the body, the site of the infection and the nature of the pathogen largely determine which type of immune response will be induced – most importantly (Fig. 1.8) whether the pathogen is:

Many bacteria and larger parasites live in tissues, body fluids, or other extracellular spaces, and are susceptible to the multitude of immune defenses, such as antibodies (see Chapter 3) and complement (see Chapter 4), that are present in these areas. Because these components are present in the tissue fluids of the body (the ‘humors’ of ancient medicine), they have been classically referred to as humoral immunity.

Many organisms (e.g. viruses, some bacteria, some parasites) evade these formidable defenses by being intracellular pathogens and replicating within host cells. To clear these infections, the immune system has developed ways to specifically recognize and destroy infected cells. This is largely the job of cell-mediated immunity.

Intracellular pathogens cannot, however, wholly evade the extracellular defenses (see Fig. 1.8) because they must reach their host cells by moving through the blood and tissue fluids. As a result they are susceptible to humoral immunity during this portion of their life cycle.

Any immune response involves:

Antigen recognition

Originally the term antigen was used for any molecule that induced B cells to produce a specific antibody (antibody generator). This term is now more widely used to indicate molecules that are specifically recognized by antigen receptors of either B cells or T cells.

Antigens, defined broadly, are molecules that initiate adaptive immune responses (e.g. components of pathogenic organisms), though purists may prefer the term immunogen in this context.

Antigens are not just components of foreign substances, such as pathogens. A large variety of ‘self’ molecules can serve as antigens as well, provoking autoimmune responses that can be highly damaging, and even lethal (see Chapter 20).

Antibody specifically binds to antigen

Soluble antibodies are a group of serum molecules closely related to and derived from the antigen receptors on B cells. All antibodies have the same basic Y-shaped structure, with two regions (variable regions) at the tips of the Y that bind to antigen. The stem of the Y is referred to as the constant region and is not involved in antigen binding (see Chapter 3).

The two variable regions contain identical antigen-binding sites that, in general, are specific for only one type of antigen. The amino acid sequences of the variable regions of different antibodies, however, vary greatly between different antibodies. The antibody molecules in the body therefore provide an extremely large repertoire of antigen-binding sites. The way in which this great diversity of antibody variable regions is generated is explained in Chapter 3.

Fc regions of antibodies act as adapters to link phagocytes to pathogens

The constant region of the antibody (the Fc region) can bind to Fc receptors on phagocytes, so acting as an adapter between the phagocyte and the pathogen (Fig. 1.10). Consequently, if antibody binds to a pathogen, it can link to a phagocyte and promote phagocytosis. The process in which specific binding of an antibody activates an innate immune defense (phagocytosis) is an important example of collaboration between the innate and adaptive immune responses.

Other molecules (such as activated complement proteins) can also enhance phagocytosis when bound to microbial surfaces.

Binding and phagocytosis are most effective when more than one type of adapter molecule (opsonin) is present (Fig. 1.11). Note that antibody can act as an adapter in many other circumstances, not just phagocytosis.

Peptides from intracellular pathogens are displayed on the surface of infected cells

Antibodies patrol only extracellular spaces and so only recognize and target extracellular pathogens. Intracellular pathogens (such as viruses) can escape antibody-mediated responses once they are safely ensconced within a host cell. The adaptive immune system has therefore evolved a specific method of displaying portions of virtually all cell proteins on the surface of each nucleated cell in the body so they can be recognized by T cells.

For example, a cell infected with a virus will present fragments of viral proteins (peptides) on its surface that are recognizable by T cells. The antigenic peptides are transported to the cell surface and presented to the T cells by MHC molecules (a group of molecules encoded with the Major Histocompatibility Complex, see Chapter 5). T cells use their antigen-specific receptors (T cell receptors – TCRs) to recognize the antigenic peptide–MHC molecule complex (Fig. 1.12).

T cell responses require proper presentation of antigen by MHC molecules (antigen presentation). To activate T cell responses this must occur on the surface of specialized antigen-presenting cells (APCs), which internalize antigens by phagocytosis or endocytosis. Several different types of leukocyte can act as APCs, including dendritic cells, macrophages, and B cells.

APCs not only display antigenic peptide–MHC complexes on their surface, but also express co-stimulatory molecules that are essential for initiating immune responses (see Chapter 8). Co-stimulatory signals are upregulated by the presence of pathogens, which can be detected by the engagement of innate immune receptors that recognize PAMPs.

Most immune responses to infectious organisms are made up of a variety of innate and adaptive components:

The two major phases of any immune response are antigen recognition and a reaction to eradicate the antigen.

Antigen activates specific clones of lymphocytes

In adaptive immune responses, lymphocytes are responsible for immune recognition, and this is achieved by clonal selection. Each lymphocyte is genetically programmed to be capable of recognizing just one particular antigen. However, the immune system as a whole can specifically recognize many thousands of antigens, so the lymphocytes that recognize any particular antigen are only a tiny proportion of the total.

How then is an adequate immune response to an infectious agent generated? The answer is that, when an antigen binds to the few lymphocytes that can recognize it, they are induced to proliferate rapidly. Within a few days there is a sufficient number to mount an adequate immune response. In other words, the antigen selects and activates the specific clones to which it binds (Fig. 1.13), a process called clonal selection. This operates for both B cells and T cells.

How can the immune system ‘know’ which specific antibodies will be needed during an individual’s lifetime? It does not know. The immune system generates antibodies (and T cell receptors) that can recognize an enormous range of antigens even before it encounters them. Many of these specificities, which are generated more or less at random (see Chapters 3 and 5), will never be called upon to protect the individual against infection.

Lymphocytes that have been stimulated, by binding to their specific antigen, take the first steps towards cell division. They:

Even when the infection has been overcome, some of the newly produced lymphocytes remain, available for restimulation if the antigen is ever encountered again. These cells are called memory cells, because they are generated by past encounters with particular antigens. Memory cells confer lasting immunity to a particular pathogen.

Antigen elimination

Antigen elimination involves effector systems

There are numerous ways in which the immune system can destroy pathogens, each being suited to a given type of infection at a particular stage of its life cycle. These defense mechanisms are often referred to as effector systems.

Immune responses to extracellular and intracellular pathogens differ

In dealing with extracellular pathogens, the immune system aims to destroy the pathogen itself and neutralize its products.

In dealing with intracellular pathogens, the immune system has two options:

Because many pathogens have both intracellular and extracellular phases of infection, different mechanisms are usually effective at different times. For example, the polio virus travels from the gut, through the blood stream to infect nerve cells in the spinal cord. Antibody is particularly effective at blocking the early phase of infection while the virus is in the blood stream, but to clear an established infection CTLs must kill any cell that has become infected.

Consequently, antibody is important in limiting the spread of infection and preventing reinfection with the same virus, while CTLs are essential to deal with infected cells (Fig. 1.15). These factors play an important part in the development of effective vaccines.

Vaccination

The study of immunology has had its most successful application in vaccination (see Chapter 18), which is based on the key elements of adaptive immunity, namely specificity and memory. Memory cells allow the immune system to mount a much stronger response on a second encounter with antigen. Compared with the primary response, the secondary response is:

The aim in vaccine development is to alter a pathogen or its toxins in such a way that they become innocuous without losing antigenicity. This is possible because antibodies and T cells recognize particular parts of antigens (the epitopes), and not the whole organism or toxin.

Take, for example, vaccination against tetanus. The tetanus bacterium produces a toxin that acts on receptors to cause tetanic contractions of muscle. The toxin can be modified by formalin treatment so that it retains its epitopes, but loses its toxicity. The resulting molecule (known as a toxoid) is used as a vaccine (Fig. 1.16).

Whole infectious agents, such as the poliovirus, can be attenuated so they retain their antigenicity, but lose their pathogenicity.

Inflammation

Tissue damage caused by physical agents (e.g. trauma or radiation) or by pathogens results in the tissue response of inflammation, which has three principal components:

Leukocytes enter inflamed tissue by crossing venular endothelium

The process of leukocyte migration is controlled by chemokines (a particular class of cytokines) on the surface of venular endothelium in inflamed tissues. Chemokines activate the circulating leukocytes causing them to bind to the endothelium and initiate migration across the endothelium (Fig. 1.17).

Once in the tissues, the leukocytes migrate towards the site of infection by a process of chemical attraction known as chemotaxis. For example, phagocytes will actively migrate up concentration gradients of certain (chemotactic) molecules.

A particularly active chemotactic molecule is C5a, which is a fragment of one of the complement components (Fig. 1.18) that attracts both neutrophils and monocytes. When purified C5a is applied to the base of a blister in vivo, neutrophils can be seen sticking to the endothelium of nearby venules shortly afterwards. The cells then squeeze between the endothelial cells and move through the basement membrane of the microvessels to reach the tissues. This process is described more fully in Chapter 6.

Immunopathology

Strong evolutionary pressure from infectious microbes has led to the development of the immune system in its present form. Deficiencies in any part of the system leave the individual exposed to a greater risk of infection, but other parts of the system may partly compensate for such deficiencies. However, there are occasions when the immune system is itself a cause of disease or other undesirable consequences.

In essence the immune system can fail in one of three ways (Fig. 1.19), resulting in autoimmunity, immunodeficiency, or hypersensitivity.

Normal but inconvenient immune reactions

The most important examples of normal immune reactions that are inconvenient in the context of modern medicine are:

In these cases it is necessary to carefully match the donor and recipient tissues so that the immune system of the recipient does not attack the donated blood or graft tissue.