Immunogenetics

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CHAPTER 13 Immunogenetics

Innate Immunity

The first simple defense against infection is a mechanical barrier. The skin functions most of the time as an impermeable barrier, but in addition the acidic pH of sweat is inhibitory to bacterial growth. The membranes lining the respiratory and gastrointestinal tracts are protected by mucus. In the respiratory tract, further protection is provided by ciliary movement, whereas other bodily fluids contain a variety of bactericidal agents, such as lysozymes in tears. If an organism succeeds in invading the body, a healthy immune system reacts immediately by recognizing the alien intruder and a chain of response is triggered.

Cell-Mediated Innate Immunity

The Toll-like Receptor Pathway

A key component of cell-mediated immunity is the Toll-like receptor (TLR) pathway. TLRs are conserved transmembrane receptors which in fruit fly embryos play a critical role in dorsal-ventral development. However, their mammalian homologs function in innate immune responses and microbial recognition (in adult Drosophila, the pathway is responsible for the formation of antimicrobial peptides) and belong to the interleukin-1/TLR superfamily. The superfamily has two subgroups based on the extracellular characteristics of the receptor—i.e., whether they possess an immunoglobulin-like domain or leucine-rich repeats. TLRs typically have extracellular leucine-rich repeats.

There are 10 TLRs in man, each receptor being responsible for recognition of a specific set of pathogen-associated molecular patterns. TLR2 has been well characterised and has an essential role in the detection of invading pathogens, recognizing peptidoglycans and lipoproteins associated with gram-positive bacteria, as well as a host of other microbial and endogenous ligands. TLR2’s primary function is therefore lipoprotein-mediated signaling, and activation of the pathway by recognition of its ligand results in activation of the transcription factor NF-κB, which in turn results in the increased expression of co-stimulatory molecules and inflammatory cytokines (Figure 13.3). These cytokines help mediate migration of dendritic cells from infected tissue to lymph nodes, where they may encounter and activate leukocytes involved in the adaptive immune response. The signaling pathways used by TLRs share many of the same proteins as the interleukin-1 receptor (IL-1R) pathway (Figure 13.2). Activation of TLR leads to recruitment of the MyD88 (this is sometimes known as the MyD88-dependent pathway) which mediates the interaction between IL-1R associated kinases 1 and 4 (IRAK1 and IRAK4).

The activation of the Toll pathway has several important effects in inducing innate immunity. These effects include the production of cytokines and chemokines, including IL-1, IL-6, and TNF-α (tumor necrosis factor-alpha), which have local effects in containing infection and systemic effects with the generation of fever and induction of acute phase responses, including production of C-reactive protein. One important medical condition related to the Toll pathway is septic shock, as activation of the Toll pathway by certain ligands induces systemic release of TNF-α. There are also important health-related consequences that result from TLR2 deficiency or mutation. TLR2 deficient mice are susceptible to infection by Gram-positive bacteria as well as meningitis from Streptococcus pneumoniae.

Humoral Innate Immunity

Several soluble factors are involved in innate immunity; they help to minimize tissue injury by limiting the spread of infectious microorganisms. These are called the acute-phase proteins and include C-reactive protein, mannose-binding protein, and serum amyloid P component. The first two act by facilitating the attachment of one of the components of complement, C3b, to the surface of the microorganism, which becomes opsonized (made ready) for adherence to phagocytes, whereas the latter binds lysosomal enzymes to connective tissues. In addition, cells infected by virus synthesize and secrete interferon-α and interferon-β, which have a role in promoting the cellular response to viral infection by NK cell activation and upregulation of the MHC class I. In addition, interferon interferes with viral replication by reducing messenger RNA (mRNA) stability and interfering with translation.

Complement

The complement system is a complex of 20 or so plasma proteins that cooperate to attack extracellular pathogens. Although the critical role of the system is to opsonize pathogens, it also recruits inflammatory cells and kills pathogens directly through membrane attack complexes. The complement system can be activated through three pathways: the classical pathway, the alternative pathway, and the mannose-binding lectin (MBL) pathway (see Figure 13.3).

Complement nomenclature, like much else in immunology, can be confusing. Each component is designated by the letter C, followed by a number. But they were numbered in order of their discovery rather than the sequence of reactions. The reaction sequence is C1, C4, C3, C5, C6, C7, C8, and C9. The product of each cleavage reaction is designated by letters, the larger fragment being ‘b’ (b = big), and the smaller fragment ‘a’. In the lectin pathway, MBL in the blood binds another protein, a serine protease called MASP (MBL-associated serine protease). When MBL binds to its target (for example, mannose on the surface of a bacterium), the MASP protein functions like a convertase to clip C3 into C3a and C3b. C3 is abundant in the blood, so this happens very efficiently. The other two complement pathways also converge toward C3 convertase, which cleaves C3. C3a mediates inflammation while C3b binds to the pathogen surface, coating it and acting as an opsonin. The effector roles of the major complement proteins can be summarized according to function as follows (Figure 13.4):

There are clinical consequences relating to mutations in the genes of these pathways. The frequency of mutations of the MBL2 gene in the general population may be 5% to 10%. Although most individuals with MBL deficiency from mutations and promoter polymorphisms in MBL2 are healthy, there is an increased risk, severity, and frequency of infections and autoimmunity. The deficiency has been reported to be particularly common in infants with recurrent respiratory tract infection, otitis media, and chronic diarrhea.

Specific Acquired Immunity

Many infective microorganisms have, through mutation and selective pressures, developed strategies to overcome or evade the mechanisms associated with innate immunity. There is a need, therefore, to be able to generate specific acquired or adaptive immunity. This can, as with innate immunity, be separated into both humoral and cell-mediated processes.

Humoral Specific Acquired Immunity

The main mediators of humoral specific acquired immunity are immunoglobulins or antibodies. Antibodies are able to recognize and bind to surface antigens of infecting microorganisms, leading to the activation of phagocytes and the initiation of the classic pathway of complement, resulting in the generation of the MAC (see Figure 13.4) and availability of other complement effector functions. Exposure to a specific antigen results in the clonal proliferation of a small lymphocyte derived from the bone marrow (hence ‘B’ lymphocytes), resulting in mature antibody-producing cells or plasma cells.

Lymphocytes capable of producing antibodies express on their surface copies of the immunoglobulin (Ig) for which they code, which acts as a surface receptor for antigen. Binding of the antigen, in conjunction with other MASPs, results in signal transduction leading to the clonal expansion and production of antibody. In the first instance this results in the primary response with production of IgM and subsequently IgG. Re-exposure to the same antigen results in enhanced antibody levels in a shorter period of time, known as the secondary response, reflecting what is known as antigen-specific immunological memory.

Immunoglobulins

The immunoglobulins, or antibodies, are one of the major classes of serum protein. Their function, both in the recognition of antigenic variability and in effector activities, was initially revealed by protein studies of their structure, and later by DNA studies.

Generation of Antibody Diversity

It could seem paradoxical for a single protein molecule to exhibit sufficient structural heterogeneity to have specificity for a large number of different antigens. Different combinations of H and L chains could, to some extent, account for this diversity. It would, however, require thousands of structural genes for each chain type to provide sufficient variability for the large number of antibodies produced in response to the equally large number of antigens to which individuals can be exposed. Our initial understanding of how this could occur came from persons with a malignancy of antibody-producing cells—multiple myeloma.

DNA studies of antibody diversity

In 1965 Dreyer and Bennett proposed that an antibody could be encoded by separate ‘genes’ in germline cells that undergo rearrangement or, as they termed it, ‘scrambling’, in lymphocyte development. Comparison of the restriction maps of the DNA segments coding for the C and V regions of the immunoglobulin λ light chains in embryonic and antibody-producing cells revealed that they were far apart in the former but close together in the latter. Detailed analysis revealed that the DNA segments coding for the V and C regions of the light chain are separated by some 1500 base-pairs (bp) in antibody-producing cells. The intervening DNA segment was found to code for a joining, or J, region immediately adjacent to the V region of the light chain. The κ L-chain was shown to have the same structure. Cloning and DNA sequencing of H-chain genes in germline cells revealed that they have a fourth region, called diversity, or D, between the V and J regions.

There are estimated to be some 60 different DNA segments coding for the V region of the H-chain, 40 for the V region of the κ L-chain, and 30 for the λ L-chain V region. Six functional DNA segments code for the J region of the H-chain, five for the J region of the κ L-chain, and four for the J region of the λ L-chain. A single DNA segment codes for the C region of the κ L-chain, seven for the C region of the λ L-chain and 11 functional DNA segments code for the C region of the different classes of H-chain. There are also 27 functional DNA segments coding for the D region of the H-chain (Figure 13.6).

The genomic regions in question also contain a large number of unexpressed DNA sequences or pseudogenes (p. 17). Although the coding DNA segments for the various regions of the antibody molecule can be referred to as ‘genes’, use of this term in regard to antibodies has deliberately been avoided because they could be considered an exception to the general rule of ‘one gene–one enzyme (or protein)’ (p. 167).

The Immunoglobulin Gene Superfamily

Several other molecules involved in the immune response have been shown to have structural and DNA sequence homology to the immunoglobulins. This involves a 110–amino acid sequence characterized by a centrally placed disulfide bridge that stabilizes a series of antiparallel β strands into an ‘antibody fold’. This group of structurally similar molecules has been called the immunoglobulin superfamily (p. 16). It consists of eight multigene families that, in addition to the κ and λ L-chains and different classes of H-chain, include the chains of the T-cell receptor (p. 16), the class I and II MHC, or human leukocyte antigens (HLA) (p. 200). Other molecules in this group include the T-cell CD4 and CD8 cell surface receptors, which cooperate with T-cell receptors in antigen recognition, and the intercellular adhesion molecules-1, -2, and -3, which are involved in leukocyte-endothelial adhesion and extravasation, T-cell activation, and T-cell homing.

Antibody Engineering

At the beginning of the 20th century, Paul Ehrlich proposed the idea of the ‘magic bullet’—the hope that one day there might be a compound that would selectively target a disease-causing organism. Today we have monoclonal antibodies (mAb) and, for almost any substance, it is possible to create a specific antibody that binds that substance. Monoclonal antibodies are the same because they are made by one type of immune cell which are all clones of a unique parent cell.

In the 1970s it was understood that the B-cell cancer multiple myeloma produced a single type of antibody—a paraprotein. The structure of antibodies was studied from this but it was not possible to produce identical antibodies specific to a given antigen. Myeloma cells cannot grow because they lack hypoxanthine-guanine-phosphoribosyl transferase, which is necessary for DNA replication. Typically, mAb are made by fusing myeloma cells with spleen cells from a mouse (or rabbit) that has been immunized with the desired antigen. They are then grown in medium which is selective for these hybrids—the spleen cell partner supplies hypoxanthine-guanine-phosphoribosyl transferase and the myeloma has immortal properties because it is a cancer cell. The cell mixture is diluted and clones grown from single parent cells. The antibodies secreted by different clones are assayed for their ability to bind to the antigen in question, with the healthiest clone selected for future use. The hybrids can also be injected into the peritoneal cavity of mice to produce tumors containing antibody-rich ascitic fluid, and the mAb then has to be extracted and purified.

To overcome the problem of purification, recombinant DNA technologies have been used since the 1980s. DNA that encodes the binding portion of mouse mAb is merged with human antibody-producing DNA. Mammalian cell culture is then used to express this DNA, producing chimeric antibodies. The goal, of course, is to creat of ‘fully human’ mAb, which has met with success in ‘phage display-generated’ antibodies and mice that have been genetically modified to produce more human-like antibodies.

Specific mAb have now been developed and approved for the treatment of cancer, cardiovascular disease, inflammatory diseases, macular degeneration, and transplant rejection, among others. A mAb that inhibits TNF-α has applications in rheumatoid arthritis, Crohn disease, and ulcerative colitis; one that inhibits IL-2 on activated T cells is used in preventing rejection of transplanted kidneys; and one that inhibits vascular endothelial growth factor (VEGF) has a role in antiangiogenic cancer therapy.

Cell-Mediated Specific Acquired Immunity

Certain microorganisms, viruses, and parasites live inside host cells. As a result, a separate form of specific acquired immunity has developed to combat intracellular infections involving lymphocytes differentiated and mature in the thymus—hence T cells. T lymphocytes have specialized receptors on the cell surface, known as T-cell surface antigen receptors, which in conjunction with the MHC on the cell surface of the infected cell result in the involvement of different subsets of T cells, each with a distinct function—T helper cells and cytotoxic T cells. The battle against intracellular infections is a cooperative, coordinated response from these separate components of the immune system, leading to death of the infected cell (Figure 13.8).

Transplantation Genetics

Organ transplantation has become routine in clinical medicine and, with the exception of corneal and bone grafts, success depends on the degree of antigenic similarity between donor and recipient. The closer the similarity, the greater the likelihood that the transplanted organ or tissue (the homograft), will be accepted rather than rejected. Homograft rejection does not occur between identical twins or between non-identical twins where there has been mixing of the placental circulations before birth (p. 50). In all other instances, the antigenic similarity of donor and recipient has to be assessed by testing them with suitable antisera or monoclonal antibodies for antigens on donor and recipient tissues. These were originally known as transplantation antigens but are now known to be a result of the MHC. As a general rule, a recipient will reject a graft from any person who has antigens that the recipient lacks. HLA typing of an individual is carried out using PCR-based techniques (p. 56).

The HLA system is highly polymorphic (Table 13.2). A virtually infinite number of phenotypes resulting from different combinations of the various alleles at these loci is theoretically possible. Two unrelated individuals are therefore very unlikely to have identical HLA phenotypes. The close linkage of the HLA loci means that they tend to be inherited en bloc, the term haplotype being used to indicate the particular HLA alleles that an individual carries on each of the two copies of chromosome 6. Thus, any individual will have a 25% chance of having identical HLA antigens with a sibling, as there are only four possible combinations of the two paternal haplotypes (say P and Q) and the two maternal haplotypes (say R and S), i.e., PR, PS, QR and QS. The siblings of a particular recipient are more likely to be antigenically similar than either of his or her parents, and the latter more than a non-relative. Therefore, a sibling is frequently selected as a potential donor.

Table 13.2 Alleles at the HLA Loci

HLA Locus Number of Alleles
A 57
B 111
C 34
D 228

HLA, human leukocyte antigen.

Although recombination occurs within the HLA region, certain alleles tend to occur together more frequently than would be expected by chance, i.e. they tend to exhibit linkage disequilibrium (p. 138). An example is the association of the HLA antigens A1 and B8 in populations of western European origin.

HLA Polymorphisms and Disease Associations

The association of certain diseases with certain HLA types (Table 13.3) should shed light on the pathogenesis of the disease, but in reality this not well understood. The best documented is between ankylosing spondylitis and HLA-B27. Narcolepsy, a condition of unknown etiology characterized by a periodic uncontrollable tendency to fall asleep, is almost invariably associated with HLA-DR2. The possession of a particular HLA antigen does not mean that an individual will necessarily develop the associated disease, only that the relative risk of being affected is greater than the general population (p. 384). In a family, the risks to first-degree relatives of those affected are low, usually no more than 5%.

Table 13.3 Some HLA-Associated Diseases

Disease HLA
Ankylosing spondylitis B27
Celiac disease DR4
21-Hydroxylase deficiency A3/Bw47/DR7
Hemochromatosis A3
Insulin-dependent diabetes (type 1) DR3/4
Myasthenia gravis B8
Narcolepsy DR2
Rheumatoid arthritis DR4
Systemic lupus erythematosus DR2/DR3
Thyrotoxicosis (Graves disease) DR3

HLA, human leukocyte antigen.

Explanations for the various HLA-associated disease susceptibilities include close linkage to a susceptibility gene near the HLA complex, cross-reactivity of antibodies to environmental antigens or pathogens with specific HLA antigens, and abnormal recognition of ‘self’ antigens through defects in T-cell receptors or antigen processing. These conditions are known as autoimmune diseases. An example of close linkage is congenital adrenal hyperplasia from a 21-hydroxylase deficiency (p. 174) from mutated CYP21, which lies within the HLA major histocompatibility locus. This form of congenital adrenal hyperplasia is strongly associated HLA-A3/Bw47/DR7 in northern European populations. Non-classical 21-hydroxylase deficiency is associated with HLA-B14/DR1, and HLA-A1/B8/DR3 is negatively associated with 21-hydroxylase deficiency.

Inherited Immunodeficiency Disorders

Inherited immunodeficiency disorders are uncommon and sometimes severe but, with early diagnosis and optimum management many patients with primary immune deficiency (PID) can remain very well. Prompt diagnosis is very important in order that treatment, for example antimicrobials, immunoglobulin, or bone marrow transplant, be instituted before significant irreversible end-organ damage takes place. Presentation is variable but often in childhood for more severe immune defects, especially after the benefits of maternal transplacental immunity have declined. New diagnoses of PID are sometimes made in adults. Investigation of immune function should be considered in all patients with recurrent infections and in children with failure to thrive. Failure to thrive, diarrhea, and hepatosplenomegaly may also be features.

Primary Inherited Disorders of Immunity

The manifestations of at least some of the PID diseases in humans can be understood by considering whether they are disorders of innate immunity or of specific acquired immunity. Abnormalities of humoral immunity are associated with reduced resistance to bacterial infections and may be lethal in infancy. Abnormalities of cell-mediated specific acquired immunity are associated with increased susceptibility to viral infections and are manifest experimentally in animals by prolonged survival of skin homografts.

Disorders of Innate Immunity

Primary disorders of innate immunity are considered under humoral and cell-mediated immunity categories.

Disorders of innate humoral immunity

A variety of defects of complement can lead to disordered innate immunity.

Disorders of complement. If a complement defect is suspected, investigation of the integrity of the classical and alternative pathways should begin with functional assays looking at the entire pathway. If functional abnormalities are found, measurement of the individual components of that pathway can be undertaken.

The clinical effects of MBL deficiency have been described previously. Defects of the third component of complement, C3, lead to abnormalities of opsonization of bacteria, resulting in difficulties in combating pyogenic infections. Defects in the later components of complement—those involved in the formation of the MAC (p. 195)—also result in susceptibility to bacterial infection, though in particular Neisseria (meningococcal infections). This includes deficiency of properdin (factor P), a plasma protein active in the alternative complement pathway.

C1 inhibitor deficiency follows autosomal dominant inheritance and there are two forms—type 1 due to low levels, and type 2 resulting from non-functioning protein. Inappropriate activation and poor control of the complement pathway occurs with breakdown of C2 and C4, and production of inflammatory mediators. C1 inhibitor also controls the kinin-bradykinin pathway and when deficient an accumulation of bradykinin in the tissues occurs, and is believed to be the main cause of oedema, triggered by episodes of surgery, dental work, trauma, and some drugs. Attacks vary in severity from mild cutaneous to abdominal pain and swelling, which can be severe—laryngeal oedema is potentially fatal. This is known as hereditary angio-edema. Acute attacks are treated with C1 inhibitor concentrate, a blood product, which has superseded fresh frozen plasma when available. In due course, a recombinant C1 inhibitor may become the treatment of choice. The drug Danazol, an androgen, is the mainstay of long-term prevention.

Other associations with disease include homozygous C2 deficiency. There are various case reports of individuals who developed cutaneous vasculitis, Henoch-Schonlein purpura, seropositive rheumatoid arthritis, polyarteritis, membranoproliferative glomerulonephritis, and an association with systemic lupus erythematosus (SLE). Similarly, C4 is associated with SLE. The copy number of C4 genes in a diploid human genome varies from two to six in the white population. Each of these genes encodes either a C4A or C4B protein. Subjects with only two copies of total C4 are at significantly increased risk of SLE, whereas those with five copies or more are at decreased risk.

Defects in NFκB signaling

Inappropriate activation of nuclear factor kappa-B (NFκB) has been linked to inflammation associated with autoimmune arthritis, asthma, septic shock, lung fibrosis, glomerulonephritis, atherosclerosis, and AIDS. Conversely, persistent inhibition of NFκB has been linked directly to apoptosis, abnormal immune cell development, and delayed cell growth.

Since 2000, mutations have occasionally been found in the X-linked IKK-gamma gene, part of the TLR pathway (p. 193), in children demonstrating failure to thrive, recurrent digestive tract infections, often with intractable diarrhea, and recurrent ulcerations, respiratory tract infections with bronchiectasis, and recurrent skin infections, presenting in infancy, suggesting susceptibility to various gram-positive and gram-negative bacteria. Sparse scalp hair is sometimes a feature and in older children oligodontia and conical-shaped maxillary lateral incisors have been noted. Survival ranged from 9 months to 17 years in one study. IgG is low and IgM usually high. Interestingly, IKKg is the same as NEMO, the gene that causes X-linked dominant incontinentia pigmenti (p. 117118). However, in this condition of the immune system mutations occur in exon 10 of the gene.

IRAK4 is another component of the TLR pathway and deficiency leads to recurrent infections, mainly from gram-positive microorganisms, though also fungi. There is a reduced inflammatory response. Infections begin early in life but become less frequent with age, some patients requiring no treatment by late childhood. It follows autosomal recessive inheritance.

Disorders of innate cell-mediated immunity

An important mechanism in innate cell-mediated immunity is phagocytosis, as previously discussed, which results in subsequent cell-mediated killing of microorganisms.

Chronic granulomatous disease. Chronic granulomatous disease (CGD) is the best known example of a disorder of phagocytic function, and follows either an X-linked or an autosomal recessive inheritance. It results from an inability of phagocytes to kill ingested microbes, because of any of several defects in the NADPH oxidase enzyme complex which generates the so-called microbicidal ‘respiratory burst’ (see Figure 13.1). Hypergammaglobulinemia may be present. CGD is therefore associated with recurrent bacterial or fungal infections, and may present as suppurative lymphadenitis, hepatosplenomegaly, pulmonary infiltrates, and/or eczematoid dermatitis. Childhood mortality was high until the advent of supportive treatment and prophylactic antibiotics. Bone marrow transplant has been successful, as well as transplantation of peripheral blood stem cells from an HLA-identical sibling. The X-linked gene mutated in CGD, CYBB, was the first human disease gene cloned by positional cloning (p. 75).

The neutropenias. The neutropenias are a heterogeneous group of disorders of varying severity, following different patterns of inheritance, and characterised by very low neutrophil counts. Autosomal dominant or sporadic congenital neutropenia (SCN1) is caused by mutation in the neutrophil elastase gene (ELA2), and mutation in the protooncogene GFI1, which targets ELA2, also causes dominantly inherited neutropenia (SCN2). Mutation in the HAX1 gene causes autosomal recessive SCN3 (‘classical’ SCN—Kostmann disease), whereas autosomal recessive SCN4 is caused by mutation in the G6PC3 gene. SCN patients with acquired mutations in the granulocyte colony-stimulating factor receptor (CSF3R) gene in hematopoietic cells are at high risk for developing acute myeloid leukemia.

In SCN, hematopoiesis is characterized by a maturation arrest of granulopoiesis at the promyelocyte level; peripheral absolute neutrophil counts are below 0.5 × 109/l and there is early onset of severe bacterial infections. As well as dominantly inherited SCN1, there is an X-linked form caused by a constitutively activating mutation in the WAS gene, mutated in Wiskott-Aldrich syndrome (see the following section).

Cyclic neutropenia rare, characterized by regular 21-day fluctuations in the numbers of blood neutrophils, monocytes, eosinophils, lymphocytes, platelets, and reticulocytes. This results in patients experiencing periodic symptoms of fever, malaise, mucosal ulcers, and occasionally life-threatening infections. As with SCN1, it is due to mutated ELA2.

Leukocyte adhesion deficiency. Individuals affected with leukocyte adhesion deficiency (LAD) present with life-threatening bacterial infections of the skin and mucous membranes and impaired pus formation. The increased susceptibility to infections occurs because of defective migration of phagocytes from abnormal adhesion-related functions of chemotaxis and phagocytosis. This disorder is fatal unless antibiotics are given, both for infection and prophylactically, until bone marrow transplantation can be offered. Three different forms of LAD are recognised, each with unique clinical features, though leukocytosis is a constant feature. LAD I and LAD II follow autosomal recessive inheritance while the mode of inheritance of LAD III is unclear; LAD II and LAD III are very rare.

LAD I is characterized by delayed separation of the umbilical cord, omphalitis, and severe recurrent infections with no pus formation. It is due to mutated ITGB2, located on chromosome 21, and encodes the β2 subunit of the integrin molecule.

LAD II patients have the rare Bombay blood group and suffer from psychomotor retardation and growth delay. It is caused by mutations in the gene encoding the Golgi-specific GDP-fucose transporter.

LAD III is similar to LAD I but includes severe neonatal bleeding tendency. Various defects in leukocyte chemotaxis and adhesion to endothelial cells have been found and the definitive diagnosis is reached by the showing defects in the integrin activation process, whereas the CD18 molecule is structurally intact. The precise genetic defect in LAD III is not known.

Disorders of Specific Acquired Immunity

Again, these can be considered under the categories of disorders of humoral and cell-mediated specific acquired immunity.

Disorders of humoral acquired immunity

Abnormalities of immunoglobulin function lead to an increased tendency to develop bacterial infections.

Bruton-type agammaglobulinemia. Boys with this X-linked immunodeficiency usually develop multiple recurrent bacterial infections of the respiratory tract and skin after the first few months of life, having been protected initially by placentally transferred maternal IgG. Features similar to rheumatoid arthritis develop in many and they are not prone to viral infection. Treatment of life-threatening infections with antibiotics and the use of prophylactic intravenous immunoglobulins have improved survival prospects, but children with this disorder can still die from respiratory failure through complications of repeated lung infections. The diagnosis of this type of immunodeficiency is confirmed by demonstration of immunoglobulin deficiency and absence of B lymphocytes. The disorder has been shown to result from mutations in a tyrosine kinase specific to B cells (Btk) that result in loss of the signal for B cells to differentiate to mature antibody-producing plasma cells. A rarer, autosomal recessive, form of agammaglobulinemia shows marked depression of the circulating lymphocytes, and lymphocytes are absent from the lymphoid tissue.

Hyper-IgM syndrome (HIGM). HIGM is another genetically heterogeneous condition that includes increased levels of IgM, and also usually of IgD, with levels of the other immunoglobulins being decreased or virtually absent. Patients are susceptible to recurrent pyogenic infections, as well as opportunistic infections such as Pneumocystis and Cryptosporidium, because of primary T-cell abnormality. In the X-linked form (HIGM1) the mutated gene encodes a cell surface molecule on activated T cells called CD40 ligand (renamed TNFSF5). When the gene is not functioning, immunoglobulin class switches are inefficient, so that IgM production cannot be readily switched to IgA or IgG. IgM levels are therefore high, and IgG levels reduced. At least four other types are recognised, including autosomal recessive forms HIGM2 (CD40 deficiency) and HIGM3 (activation-induced cytidine deaminase, AICDA) deficiency.

Hyper-IgE syndrome. Again heterogeneous, this condition is sometimes known as Job syndrome and is a PID characterized by chronic eczema, recurrent staphylococcal infections, increased serum IgE, and eosinophilia. Abscesses may be ‘cold’, i.e. they lack of surrounding warmth, erythema, or tenderness. Patients have a distinctive coarse facial appearance, abnormal dentition, hyperextensibility of the joints, and bone fractures. Autosomal dominant HIES is caused by mutation in the STAT3 gene and autosomal recessive by mutation in DOCK8.

Common variable immunodeficiency (CVID). CVID constitutes the most common group of B-cell deficiencies but is very heterogeneous and the causes are basically unknown. The presentation is similar to that for other forms of immune deficiency, including nodular lymphoid hyperplasia. The sexes are equally affected and presentation can begin at any age. Affecting approximately 1:800 Caucasians, selective IgA deficiency is the most frequently recognized PID. Many affected people have no obvious health problems, but others may have recurrent infections, gastrointestinal disorders, autoimmune diseases, allergies, or malignancies. The pathogenesis is arrest of B-cell differentiation, giving rise to a normal number of IgA-bearing B-cell precursors but a profound deficit in IgA-producing plasma cells. The response to immunization with protein and polysaccharide antigens is abnormal.

CVID is regarded as a ‘wastebasket’ category that includes a number of immune disorders; however, most individuals with CVID show a distinctive phenotype characterized by normal numbers of immunoglobulin-bearing B-cell precursors and a broad deficiency of immunoglobulin isotypes. CD40 ligand deficiency has been found in some patients in this group.

Disorders of cell-mediated specific acquired immunity

The most common inherited disorder of cell-mediated specific acquired immunity is severe combined immunodeficiency (SCID).

Severe combined immunodeficiency. SCID, as the name indicates, is associated with an increased susceptibility to both viral and bacterial infections because of profoundly abnormal humoral and cell-mediated immunity. Common to all forms of SCID is the absence of T cell–mediated cellular immunity from defective T-cell development. Presentation is in its infancy with recurrent, persistent, opportunistic infections by many organisms, including Candida albicans, Pneumocystis carinii, and cytomegalovirus. The incidence of all types of SCID is approximately 1:75,000. Death usually occurs in infancy because of overwhelming infection, unless a bone marrow transplant is performed. SCID is genetically heterogeneous and can be inherited as either an X-linked or autosomal recessive disorder. The X-linked form (SCIDX1) is the most common form of SCID in males, accounting for 50% to 60% overall, and has been shown to be due to mutations in the γ chain of the cytokine receptor for IL-2 (IL2RG). In approximately one-third to one-half of children with SCID that is not X-linked, inheritance is autosomal recessive (SCID1) and the different forms are classified according to whether they are B-cell negative (T-B–) or B-cell positive (T-B+). The presence or absence of NK cells is variable.

T-B+ SCID, apart from SCIDX1, includes deficiency of the protein tyrosine phosphatase receptor type C (or CD45) deficiency. CD45 suppresses Janus kinases (JAK), and there is a specific B-cell–positive SCID due to JAK3 deficiency, which can be very variable—from subclinical to life threatening in early childhood. Other rare autosomal recessive forms of SCID include mutation in the IL7R gene—IL2RG is dependent on a functional interleukin-7 receptor.

T-B-SCID includes adenosine deaminase deficiency, which accounts for approximately 15% of all SCID and one-third of autosomal recessive SCID. The phenotypic spectrum is variable, the most severe being SCID presenting in infancy and usually resulting in early death. Ten to 15% of patients have a ‘delayed’ clinical onset by age 6 to 24 months, and a smaller percentage of patients have ‘later’ onset, diagnosed from ages 4 years to adulthood, showing less severe infections and gradual immunologic deterioration. The immune system is affected through the accumulation of purine degradation products that are selectively toxic to T cells. Rare forms of B-cell negative SCID include mutated RAG1/RAG2 (recombination activating genes), which are normally responsible for VDJ recombinations (p. 199) that lead to mature immunoglobulin chains and T-cell receptors. In addition, cases occur due to mutation in the Artemis gene (DNA cross-link repair protein 1c—DCLRE1C). The latter forms are both sensitive to ionizing radiation. Lastly, reticular dysgenesis is a rare and very severe form of SCID characterized by congenital agranulocytosis, lymphopenia, and lymphoid and thymic hypoplasia with absent cellular and humoral immunity functions. It is due to mutation in the mitochondrial Adenylate kinase-2 gene (AK2).

Secondary or Associated Immunodeficiency

There are a number of hereditary disorders in which immunological abnormalities occur as one of a number of associated features as part of a syndrome.

DiGeorge/Sedláčková Syndrome

Children with the DiGeorge syndrome (also well described by Sedláčková, 10 years earlier than DiGeorge) present with recurrent viral illnesses and are found to have abnormal cellular immunity as characterized by reduced numbers of T lymphocytes, as well as abnormal antibody production. This has been found to be associated with partial absence of the thymus gland, leading to defects in cell-mediated immunity and T cell–dependent antibody production. Usually these defects are relatively mild and improve with age, as the immune system matures, but occasionally the immune deficiency is very severe because no T cells are produced and bone marrow transplantation is indicated. It is important for all patients diagnosed to be investigated by taking a full blood count with differential CD3, CD4, and CD8 counts, and immunoglobulins. The levels of diphtheria and tetanus antibodies can indicate the ability of the immune system to respond. These patients usually also have a number of characteristic congenital abnormalities, which can include heart disease and absent parathyroid glands. The latter finding can result in affected individuals presenting in the newborn period with tetany due to low serum calcium levels secondary to low parathyroid hormone levels. This syndrome has been recognized to be part of the spectrum of phenotypes caused by abnormalities of the third and fourth pharyngeal pouches (p. 95) as a consequence of a microdeletion of chromosome band 22q11.2 (p. 282).

Carrier Tests for X-Linked Immunodeficiencies

Before it was possible to sequence the genes responsible for Wiskott-Aldrich syndrome, Bruton-type hypogammaglobulinemia, and X-linked SCID, the availability of closely linked DNA markers allowed female carrier testing by studies of the pattern of X-inactivation (p. 103) in the lymphocytes of females at risk. A female relative of a sporadically affected male with an X-linked immunodeficiency would be confirmed as a carrier by the demonstration of a non-random pattern of X-inactivation in the T-lymphocyte population, indicating that all her peripheral blood T lymphocytes had the same chromosome inactivated (Figure 13.9).

The carrier (C) and non-carrier (NC) are both heterozygous for an HpaII/MspI restriction site polymorphism. HpaII and MspI recognize the same nucleotide recognition sequence, but MspI cuts double-stranded DNA whether it is methylated or not, whereas HpaII cuts only unmethylated DNA (i.e., only the active X chromosome). In the carrier female, the mutation in the SCID gene is on the X chromosome on which the HpaII/MspI restriction site is present. EcoRI/MspI double digests of T lymphocytes result in 6, 4, and 2-kilobase (kb) DNA fragments on gel analysis of the restriction fragments for both the carrier and non-carrier females. EcoRI/HpaII double digests of T-lymphocyte DNA result, however, in a single 6-kb fragment in the carrier female. This is because in a carrier the only T cells to survive will be those in which the normal gene is on the active unmethylated X chromosome. Thus, inactivation appears to be non-random in a carrier, although, strictly speaking, it is cell population survival that is non-random.

Blood Groups

Blood groups reflect the antigenic determinants on red cells and were one of the first areas in which an understanding of basic biology led to significant advances in clinical medicine. Our knowledge of the ABO and Rhesus blood groups has resulted in safe blood transfusion and the prevention of Rhesus hemolytic disease of the newborn.

The ABO Blood Groups

The ABO blood groups were discovered by Landsteiner early in the twentieth century. In some cases blood transfusion resulted in rapid hemolysis because of incompatibility. Four major ABO blood groups were discovered: A, B, AB, and O. Those with blood group A possess the antigen A on the surface of their red blood cells, blood group B has antigen B, AB has both antigens, and those with blood group O have neither. People of blood group A have naturally occurring anti-B antibodies, and blood group B have anti-A, whereas blood group O have both. The alleles at the ABO blood group locus are inherited in a co-dominant manner but are both dominant to the gene for the O antigen. There are, therefore, six possible genotypes (Table 13.4).

Blood group AB individuals do not produce A or B antibodies, so they can receive a blood transfusion from people of all other ABO blood groups, and are therefore referred to as universal recipients. On the other hand, because individuals of group O do not express either A or B antigens on their red cells, they are referred to as universal donors. Antisera can differentiate two subgroups of blood group A, A1, and A2, but this is of little practical importance as far as blood transfusions are concerned.

Individuals with blood groups A, B, and AB possess enzymes with glycosyltransferase activity that convert the basic blood group, which is known as the ‘H’ antigen, into the oligosaccharide antigens ‘A’ or ‘B’. The alleles for blood groups A and B differ in seven single base substitutions that result in different A and B transferase activities, the A allele being associated with the addition of N-acetylgalactosaminyl groups and the B allele with the addition of d-galactosyl groups. The O allele results from a critical single base-pair deletion that results in an inactive protein incapable of modifying the H antigen.

Rhesus Blood Group

The Rhesus (Rh) blood group system involves three sets of closely linked antigens, Cc, Dd, and Ee. D is very strongly antigenic and persons are, for practical purposes, either Rh positive (possessing the D antigen) or Rh negative (lacking the D antigen).

Rhesus Hemolytic Disease of the Newborn

A proportion of women who are Rh-negative have an increased chance of having a child who will either die in utero or be born severely anemic because of hemolysis, unless transfused in utero. This occurs because if Rh-positive blood is given to persons who are Rh-negative, the majority will develop anti-Rh antibodies. Such sensitization occurs with exposure to very small quantities of blood and, once a person is sensitized, further exposure results in the production of very high antibody titers.

In the case of an Rh-negative mother carrying an Rh-positive fetus, fetal red cells that cross to the mother’s circulation can induce the formation of maternal Rh antibodies. In a subsequent pregnancy, these antibodies can cross the placenta from the mother to the fetus, leading to hemolysis and severe anemia. In its most severe form, this is known as erythroblastosis fetalis, or hemolytic disease of the newborn. After a woman has been sensitized. there is a significantly greater risk that a child in a subsequent pregnancy, if Rh-positive, will be more severely affected.

To avoid sensitizing an Rh-negative woman, Rh-compatible blood must always be used in any blood transfusion. Furthermore, the development of sensitization, and therefore Rh incompatibility after delivery, can be prevented by giving the mother an injection of Rh antibodies—anti-D—so that fetal cells in the maternal circulation are destroyed before the mother can become sensitized.

It is routine to screen all Rh-negative women during pregnancy for the development of Rh antibodies. Despite these measures, a small proportion of women do become sensitized. If Rh antibodies appear, tests are carried out to see whether the fetus is affected. If so, there is a delicate balance between the choice of early delivery, with the risks of prematurity and exchange transfusion, and treating the fetus in utero with blood transfusions.

Further Reading

Bell JI, Todd JA, McDevitt HO. The molecular basis of HLA–disease association. Adv Hum Genet. 1989;18:1-41.

Good review of the HLA–disease associations.

Dreyer WJ, Bennet JC. The molecular basis of antibody formation: a paradox. Proc Natl Acad Sci. 1965;54:864-869.

The proposal of the generation of antibody diversity.

Hunkapiller T, Hood L. Diversity of the immunoglobulin gene superfamily. Adv Immunol. 1989;44:1-63.

Good review of the structure of the immunoglobulin gene superfamily.

Lachmann PJ, Peters K, Rosen FS, Walport MJ. Clinical aspects of immunology, 5 edn. Oxford: Blackwell; 1993.

A comprehensive three-volume multiauthor text covering both basic and clinical immunology.

Murphy KM, Travers P, Walport M. Janeway’s immunobiology, 7 edn. Oxford: Garland Science; 2007.

Good, well-illustrated, textbook of the biology of immunology.

Roitt I. Essential immunology, 9th edn. Oxford: Blackwell; 1997.

Excellent basic immunology textbook.

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