Immunity to Viruses

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Chapter 13 Immunity to Viruses

Summary

Innate immune responses (mediated by anti-microbial peptides, type I interferons (IFNs), dendritic cells (DCs), natural killer (NK) cells, and macrophages) restrict the early stages of infection, delay spread of virus and promote the activation of adaptive responses. Innate defences are triggered following recognition of molecular ‘patterns’ characteristic of viral but not host components. Type I IFNs exert direct antiviral activity and also activate other innate and adaptive responses. NK cells are cytotoxic for virally infected cells. Macrophages act at three levels to destroy virus and virus-infected cells.

As a viral infection proceeds, the adaptive (specific) immune response unfolds. Antibodies and complement can limit viral spread or reinfection. T cells mediate viral immunity in several ways – CD8+ T cells destroy virus-infected cells or cure them of infection; CD4+ T cells promote antibody and CD8+ T cell responses and are a major effector cell population in the response to some virus infections.

Viruses have evolved strategies to evade the immune response. They may impair the host immune response at the induction and/or effector stages; avoid recognition by the immune response, e.g. via latency or antigenic variation; or resist control by immune effector mechanisms. Many viruses employ multiple strategies to prolong their replication in the host.

Responses induced during viral infections can have pathological consequences. Damage can be mediated by antiviral responses (e.g. via the formation of immune complexes or T cell-induced damage to host tissues) or by autoimmune responses triggered during the course of infection.

Innate immune defenses against viruses

The early stage of a viral infection is often a race between the virus and the host’s defense system, in which the virus tries to overcome host defenses in order to establish an infection and then spread to other tissues.

The initial defense against virus invasion is the integrity of the body surface – for a virus to infect its host it needs to overcome anatomical barriers such as acid pH, proteolytic enzymes, bile and mucous layers. Once these outer defenses are breached, the presence of infection triggers activation of an inflammatory response with activation of local DCs and macrophages and production of a variety of cytokines, chemokines and antimicrobial peptides that establish a local anti-viral state and guide immune system cells to the site of infection.

The innate response plays a critical role in control of early virus replication and spread. Key innate antiviral effectors include type I IFNs, TNFα, defensins, NK cells, neutrophils, and macrophages. A second important role of the innate response is to promote the activation of adaptive responses to eliminate the infection and provide protection against re-infection.

Type I interferons have critical antiviral and immunostimulatory roles

The activation of the IFN system is arguably the most important defence for containing the initial stages of virus infection. There are three major families of IFNs:

Other types of IFN exist, including IFN-ω, -τ, -δ, and -κ, some of which play a role during pregnancy. Here we will focus on the IFNs with antiviral activity. Of these, it is the type I and type III IFNs that are induced directly following virus infection, whereas IFNγ is produced by activated T cells and NK cells. Type III IFNs are much less well characterized than type I IFNs, but their functions are thought to be similar.

Type I IFN production typically starts to be induced within the first few hours after virus infection. Type I IFNs can be produced by almost any cell type in the body if it becomes infected with a virus. There are also specialized interferon-producing cells, plasmacytoid DCs, which can be triggered to produce high levels of type I IFN following exposure to virus without themselves becoming infected. This is important because, as discussed below, many viruses have evolved strategies for impairing type I IFN production in the cells they infect. Plasmacytoid DCs typically make at least half of the type I IFN produced during a virus infection.

Type I IFN production is triggered following recognition of molecular patterns characteristic of viral but not host components (Fig. 13.1). Host pattern-recognition receptors involved in detecting the presence of virus infections include:

Triggering of pattern-recognition receptors initiates signaling along pathways that culminate in the activation of transcription factors including IFN regulatory factor (IRF)3 and NFκB, which translocate into the nucleus and activate the transcription of type I IFNs and inflammatory cytokines, respectively (see Fig. 13.1). Plasmacytoid DCs also have a unique signaling pathway for induction of type I IFN production in response to TLR7 or TLR9 ligation that involves the transcription factor IRF7.

The IFN released acts on both the cell producing it and also neighboring cells where it establishes an antiviral state, enabling them to resist virus infection (Fig. 13.2).

IFNs mediate their activity by up-regulating the expression of a large number of genes known as IFN-stimulated genes (ISGs), some of which encode proteins that mediate an antiviral response. These include the key dsRNA-dependent enzymes protein kinase R (PKR) and 2′,5′-oligoadenylate synthetase.

Another inhibitor of transcriptional activation is the Mx protein, which is active against variety of RNA viruses, most notably influenza virus. Although some ISGs have broad activity against multiple viruses there are also other ISGs that mediate antiviral activity against selected classes of viruses, e.g. apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like (APOBEC)s, which combat infection with retroviruses including HIV-1.

In addition to the direct inhibition of virus replication, IFNs also activate macrophages and NK cells and enhance their antiviral activity (see Fig. 13.2). In addition, they help to promote the activation of adaptive responses. They act on antigen presenting cells including conventional DCs to stimulate increased expression of MHC class I and II, along with components of the antigen processing machinery; and they also act directly on T and B cells to promote an antiviral response (see Fig. 13.2).

The importance of type I IFNs in vivo is underlined by the increased susceptibility of mice lacking the IFNα/β receptor to virus infection. Similarly, depletion of IFNs by specific antibody treatment also augments virus infection.

NK cells are cytotoxic for virally-infected cells

Activated NK cells can typically be detected within 2 days of virus infection. Since viruses require the replicative machinery of live cells to reproduce, NK cells act to combat virus replication directly by recognizing and killing infected cells; they also produce cytokines such as IFNγ and TNFα and mediate important immunomodulatory effects, stimulating the activation of macrophages via IFNγ and regulating DC responses.

NK cells are non-specifically activated by innate cytokines including type I IFNs, IL-12, IL-15, and IL-18, but their activation state and effector activity are also regulated by signaling through multiple activating and inhibitory receptors.

NK cells are important in combating herpes virus infections

The NK response to murine cytomegalovirus (MCMV) is especially well-characterized (Fig. 13.w1) and has given important insights into virus-NK interactions.

In the early stages of MCMV infection NK cells respond to locally-produced innate cytokines by undergoing non-specific activation and proliferation. In C57BL/6 mice, specific recognition of MCMV-infected cells is mediated by NK cells expressing the activating NK receptor Ly49H, which interacts with the MCMV protein m157 on infected cells. This results in a clonal expansion of m157-specific NK cells, which play a critical role in controlling virus replication. Mouse strains which lack Ly49H or other activating receptors that can specifically recognize MCMV are highly susceptible to infection with this virus. Notably, passage of MCMV in C57BL/6 mice leads to selection of viruses bearing mutations in the m157 gene, the replication of which is not well-controlled in these mice.

If the m157 protein of MCMV targets infected cells for recognition by NK cells, why does the virus express this protein? Although m157 enables mouse strains expressing the activating NK receptor Ly49H to recognize and destroy MCMV-infected cells, certain other inbred mouse strains express an inhibitory receptor, Ly49I, which also binds to m157 and protects the virus by inhibiting NK cell responses in these animals.

The m157-driven activation and expansion of Ly49H-expressing NK cells in C57BL/6 mice bears similarities to clonal expansion of antigen-specific T cells. Following virus clearance, the frequency of Ly49H-expressing NK cells declines – but the remaining population of cells retains the capacity to mediate a more efficient response on secondary exposure to MCMV, reminiscent of the heightened responsiveness of memory T cells. These recent findings of antigen specificity and memory (defining features of adaptive responses) in NK populations suggest that there can be overlap between features of the innate and adaptive response during virus infections – nonetheless the rapid response to naive NK cells to infection and multiple ‘generic’ mechanisms for NK activation demonstrate that their principal role is as an innate effector subset.

Adaptive immune responses to viral infection

The adaptive immune response typically begins a few days after innate responses are activated (Fig. 13.3). T cells start to appear at sites of infection around 4 days after the initiation of viral expansion. In many virus infections, it is the action of CD8+ T cells that plays a key role in the resolution of infection. Antibodies are frequently induced slightly later, around day 6/7, and contribute to recovery from infection.

A key feature of the adaptive immune response is the establishment of immunological memory which forms the basis of a number of highly successful vaccines against virus infections.

Antibodies and complement can limit viral spread or reinfection

Antibodies can neutralize the infectivity of viruses

Antibodies provide a major barrier to virus spread between cells and tissues and are particularly important in restricting virus spread in the bloodstream. IgA production becomes focused at mucosal surfaces where it serves to prevent reinfection.

An important mechanism of IgA-mediated neutralization occurs intracellularly as IgA passes from the luminal to the apical surface of the cell. During this transcytosis vesicles containing IgA interact with those containing virus, leading to neutralization.

Antibodies may be generated against any viral protein in the infected cell.

Defense against free virus particles involves neutralization of infectivity, which can occur in various ways (Fig. 13.4). Such mechanisms are likely to operate in vivo because injection of neutralizing monoclonal antibodies is highly effective at inhibiting virus replication. The presence of circulating virus-neutralizing antibodies is an important factor in the prevention of reinfection. Passively-administered monoclonal antibodies have been used therapeutically to inhibit respiratory syncytial virus and influenza virus infections.

T cells mediate viral immunity in several ways

T cells exhibit a variety of functions in antiviral immunity:

An absence of T cells renders the host highly susceptible to virus attack. For example, cutaneous infection of congenitally athymic ‘nude’ mice (which lack mature T cells) with herpes simplex virus (HSV) results in a spreading lesion and the virus eventually travels to the central nervous system, resulting in death of the animal. The transfer of HSV-specific T cells shortly after infection is sufficient to protect the mice.

CD8+ T cells target virus-infected cells

The principal T cell surveillance system operating against viruses is highly efficient and selective. CD8+ T cells identify virus-infected cells by recognizing MHC class I molecules presenting virus-derived peptides on the cell surface, and are triggered to mediate effector functions that clear the infection.

CD8+ T cells:

‘Curative’ mechanisms are particularly important when infection is very widespread and it would be neither feasible for CD8+ T cells to interact with and kill every infected cell, nor desirable for so many host cells to be destroyed.

Virtually all cells in the body express MHC class I molecules, making this an important mechanism for identifying and eliminating or curing virus-infected cells.

Because of the central role played by MHC class I in targeting CD8+ T cells to infected cells, some viruses have evolved elaborate strategies to disrupt MHC class I expression, thereby interfering with T cell recognition and favoring virus persistence (see below).

Almost any viral protein can be processed in the cytoplasm to generate peptides that are transported to the endoplasmic reticulum where they interact with MHC class I molecules.

The importance of T cells in in vivo control of virus infections has been identified using various techniques.

In animals:

In humans:

The ability of knockout mice that lack particular lymphocyte populations to mediate control of some virus infections illustrates the redundancy that can occur in the immune system. For example, in the absence of CD8+ T cells, CD4+ T cells, antibodies or other mechanisms, individuals are sometimes able to compensate and still bring the infection under control.

CD4+ T cells are a major effector cell population in the response to some virus infections

CD4+ T cells have also been identified as a major effector cell population in the immune response to some virus infections. A good example is in HSV-1 infection of epithelial surfaces. Here, CD4+ T cells participate in a delayed-type hypersensitivity response (see Chapter 26) that results in accelerated clearance of virus. They produce cytokines such as IFNγ and TNFα, which mediate direct antiviral effects and also help to activate macrophages at the site of infection. Macrophages play an important role in inhibiting virus infection, probably through the generation and action of nitric oxide (Fig. 13.5).

In measles virus and Epstein–Barr virus (EBV) infections, CD4+ CTLs are generated that recognize and kill MHC class II-positive cells infected with the virus using the cytolytic mechanisms also employed by CD8+ CTLs. This suggests that measles virus and EBV peptides are generated by normal pathways of antigen presentation (i.e. following phagocytosis and degradation, see Chapter 8). However, other pathways have been implicated in which some measles proteins/peptides enter class II vesicles from the cytosol.

A summary of antiviral defense mechanisms is illustrated in Figure 13.6.

Virus strategies to evade host immune responses

To promote their survival, viruses have evolved multiple strategies for evasion of control by the host immune response. Avoidance of immune clearance is essential for viruses that persist in their hosts for long periods – but even for viruses that cause acute infections, immune evasion strategies are important to prolong infection and increase the opportunities for transmission to new hosts.

Viral immune evasion strategies can be categorized into mechanisms for:

Some viruses employ multiple strategies in each category to promote their persistence in vivo: human immunodeficiency virus type 1 (HIV-1) provides a particularly good example of this (Fig. 13.7).

Viruses can impair the host immune response

Virus infections can sometimes be associated with a profound widespread impairment of host immune functions, e.g. the generalized immune suppression associated with measles virus infection, or the acquired immunodeficiency syndrome (AIDS) induced in the late stages of HIV-1 infection. Whilst induction of a state of generalized immune dysfunction does impair control of virus replication, it also impacts on host survival – so is not an ideal strategy for promoting virus persistence. Many viruses instead induce impairments in host immunity that are more localized, more limited and/or target virus-specific cellular or humoral responses.

The importance of type I IFNs in innate control of local virus replication and spread is illustrated by the fact that many different families of viruses have evolved strategies for blocking type I IFN production in the cells they infect. Some viruses also impair the recruitment of plasmacytoid DCs to sites of infection, reduce circulating plasmacytoid DC numbers or infect plasmacytoid DCs and impair their functions to reduce type I IFN production by these specialized IFN-producing cells.

Chemokines represent an important traffic-light system for cell migration and viruses have evolved elaborate strategies for disrupting the chemokine network. The herpesviruses encode:

Viruses may also inhibit the induction of adaptive responses by infecting and interfering with the functions of key antigen presenting cells such as DCs, or by producing cytokine homologues such as vIL-10 (herpesviruses) that modulate the nature of the response induced.

Given the critical role of T cells, particularly CD8+ CTLs, in elimination of established virus infections, viruses that establish long-term persistent infections in their hosts frequently possess strategies for impairment of the virus-specific CD8+ T cell response.

Viral strategies for avoidance of recognition by host immune defenses

Strategies viruses use to avoid recognition by host immune defenses include:

Some viruses establish a latent infection within certain host cells, during which there is little or no production of viral proteins. Latently-infected cells are thus essentially ‘invisible’ to the host immune system. Cells such as HSV-infected neurons can thus persist for the life of the host in this form – although if the infection is to be spread to new hosts, latency also needs to be accompanied by continuous or sporadic productive virus replication.

Another strategy that viruses use to avoid recognition by host immune defences is to replicate in ‘immune privileged’ sites, i.e. parts of the body to which adaptive responses have limited access and where there may also be an ‘immune-suppressive’ environment, such as in the brain (see Chapter 12). A surprising number of different viruses persist in the brain.

Mutation of viral target antigen allows escape from recognition by antibodies or T cells

Antigenic variation involves a virus acquiring sequence changes (mutations) in sites on proteins that are normally targeted by antibody or T cells so that these sites are no longer recognized. Antigenic variation can promote virus persistence within a given host, e.g. during HIV-1 infection mutations are frequently selected for in and around the epitopes recognized by the initial T cell responses and neutralizing antibody responses, which confer escape from recognition by these responses and enable enhanced virus replication. It can also promote virus persistence at the population level, as exemplified by the antigenic shift and drift seen with influenza virus (Fig. 13.8). Humoral immunity to influenza virus provides protection against re-infection only until a new virus strain emerges, making effective longlasting vaccines difficult to produce.

Viral strategies for resisting control by immune effector mechanisms

Viruses have evolved strategies for resisting control by many different immune effector mechanisms including:

In addition to impairing production of type I IFNs, viruses also have many strategies for resisting control by these important antiviral cytokines. This can be achieved via:

Viruses may also resist control by other antiviral cytokines, e.g. several poxviruses encode soluble receptors to interfere with TNF function.

Other viral proteins produced in infected cells protect the cells from lysis by TNF: adenoviruses, herpesviruses and poxviruses all encode proteins with this function. HIV protects the cells it infects from lysis mediated not only via TNF, but also via Fas.

As noted above some viruses also possess strategies for resisting control by antibodies and complement. Some herpesviruses and poxviruses encode homologues for CD46 and CD55 (complement regulatory proteins that block C3 activation) and also for CD59, which blocks formation of the membrane attack complex. HIV makes use of cellular CD59, which is incorporated into the viral envelope, thereby blocking complement-mediated lysis of the virion.

Examples of virus-encoded homologues or mimics of the host defense system are shown in Figure 13.9.

Pathological consequences of immune responses induced by viral infections

Although the host immune response plays a vital role in combating virus infections, it can also have immunopathological consequences. These can result from inappropriate antiviral immune responses, or from the induction of autoimmune responses during the course of a virus infection.

Viral infection may provoke autoimmunity

Viruses may trigger autoimmune disease in a number of ways, including:

Further reading

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