Cell-mediated Cytotoxicity

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Chapter 10 Cell-mediated Cytotoxicity

Summary

Cell-mediated cytoxicity is an essential defence against intracellular pathogens, including viruses, some bacteria and some parasites.

CTLs and NK cells are the lymphoid effectors of cytotoxicity. Most CTLs are CD8+ and respond to non-self antigens presented on MHC class I molecules. Some virally infected and cancerous cells try to evade the CTL response by downregulating MHC class I. NK cells recognize these MHC class I negative targets.

NK cells recognize cells that fail to express MHC class I. NK cells express a variety of inhibitory receptors that recognize MHC class I molecules. When these receptors are not engaged, the NK cell is activated. Killer Immunoglobulin-like Receptors (KIRs) recognize classical MHC class I molecules. CD94 interacts with HLA-E. LILRB1 recognizes a wide range of class I molecules.

Cancerous and virally infected cells express ligands for the activating receptor NKG2D. Stressed cells, including cancerous and virally infected cells, upregulate ULBP1–3, MICA and MICB, which are ligands for NKG2D. This results in NK cell activation.

NK cells can also mediate ADCC.

The balance of inhibitory and activating signals determines NK cell activation.

Cytotoxicity is effected by direct cellular interactions, granule exocytosis and cytokine production. Fas ligand and TNF can induce apoptosis in the target cell. Granules containing perforin and granzymes are also released. Perforin forms a pore in the cell membrane, allowing granzymes access to the cytosol. Granzymes trigger the cell’s intrinsic apoptosis pathways.

Macrophages, neutrophils and eosinophils are non-lymphoid cytotoxic effectors. Macrophages and neutrophils usually destroy pathogens by phagocytosis, but can also sometimes release the contents of their granules into the extracellular environment. Eosinophils release cytotoxic granules in response to antibody-coated cells.

Cytotoxic lymphocytes

Cytotoxicity describes the ways in which leukocytes can recognize and destroy other cells. It is an essential defense against intracellular pathogens, including:

Tumor cells and even normal host cells may also become the targets of cytotoxic cells. Cytotoxicity is important in the destruction of allogeneic tissue grafts.

Several types of cells have cytotoxic potential, including:

The two cytotoxic lymphoid effector cells recognize their targets in different ways, but use similar mechanisms to kill them. The myeloid cells use different recognition and killing mechanisms from the lymphoid cells, and indeed these also differ between different types of myeloid cell.

CTLs recognize antigen presented on MHC class I molecules

The most important role of CTLs is the elimination of virally infected cells. CTLs recognize specific antigens (e.g. viral peptides on infected cells) presented by MHC class I molecules, which are expressed by nearly all nucleated cells. Cellular molecules that have been partly degraded by the proteasome are transported to the endoplasmic reticulum, where they become associated with MHC class I molecules and are transported to the cell surface. Normal cells therefore present a sample of all the antigens they produce to CD8+ T cells.

Additional interactions may be required to stabilize the bond between a CTL and its target. Like CD4+ T cells, CD8+ CTLs form an immunological synapse with their target. Signaling molecules including the TCR and CD3 are found in the central zone of the supra-molecular activation cluster (cSMAC), while adhesion molecules segregate in the peripheral zone (pSMAC). In contrast to CD4+ T cells, the cSMAC of CTLs and NK cells is divided into signaling and secretory domains (Fig. 10.2). After signaling has occurred, the microtubule organizing center polarizes towards the synapse, directing cytotoxic granules to the secretory domain of the cSMAC. Early CTL signaling occurs within ten seconds of cell–cell contact and granule release follows some two minutes later.

NK cell development

Like T and B cells, NK cells belong to the lymphoid lineage. However, the pathways and locations of NK cell development are still less well-defined than those of T and B cells. There may also be some differences between humans and mice.

In mice, the bone marrow is essential for the production of NK cells, and a complete pathway of NK development has been described at this location. Human bone marrow does contain CD34+ hematopoietic progenitor cells that have the potential to differentiate into NK cells, but NK-committed progenitor cells have not been identified here. On the other hand, a complete scheme of NK cell development has been described in human, but not mouse, secondary lymphoid tissue. Circulating CD34+ cells are thought to be recruited from the blood to the lymph nodes, where they progress through an NK-committed immature stage to give rise to CD94+CD56hi mature NK cells, capable of effector functions (Fig. 10.w1). CD56hi cells can further develop into CD56low cells, which express KIRs and are more cytotoxic than CD56hi cells. A thymic pathway of NK cell development has also been described in both humans and mice. However, this pathway is clearly not required for NK cell production as athymic individuals have normal NK cell numbers and function.

The factors required for NK cell development have been identified using in vitro cultures of human hematopoietic stem cells and by examining knockout mice. Initially, NK cell development in culture was thought to be absolutely dependent on contact with a stromal cell feeder layer, but it was then discovered that at later stages of development, exogenously added cytokines can substitute for the presence of stroma and that IL-2 or IL-15 alone can mediate the differentiation of NK-committed cells to CD56hi mature NK cells. Although NK cells will develop in the presence of either IL-2 or IL-15, only IL-15 is made by the stroma. The phenotype of knockout mice and humans with genetic deficiencies also suggests that it is IL-15, and not IL-2, which is the critical cytokine for NK cell development. Flt3L and stem cell factor (SCF) synergistically promote NK cell development, but are not absolutely required.

For the acquisition of KIRs, which occurs at the final stage of development, as CD56hi NK cells become CD56low, contact with stromal cells is once again required. Defective Ly49 expression by NK cells in the Tyro/Axl/Mer triple knockout mouse suggests that this may be partially because there is a requirement for an interaction between Protein S or Gas6 on stroma and one of their receptors (Tyro, Axl or Mer) on developing NK cells. Stromal MHC class I molecules are also likely to be important for acquisition of KIR. Several of the genes that are required for immune recognition by NK cells are grouped together on the leukocyte receptor complex on the long arm of chromosome 19 (Fig. 10.w2).

Most of what is known about the transcriptional control of NK cell development comes from knockout mice, although where attempts have been made to transfect human hematopoietic stem cells with genes of interest, this has confirmed that similar transcription factors are likely to be important in human NK cell development. The master transcriptional regulator of NK cell development has recently been identified as E4bp4, which is also known as Nfil3. E4bp4 knockout mice do not have any NK cells, but are normal in all other aspects of their immune system. Downstream of E4bp4 are other factors involved in commitment to the NK lineage, most notably Id2, and factors required for their migration from the bone marrow to the periphery. T-bet, IRF2 and GATA3 are all thought to be required at this stage, as knockouts of these genes accumulate NK cells in the bone marrow but have low numbers in the periphery. Finally, there are transcription factors that are required for the acquisition of NK cell function. For example, CEBPγ knockout mice have normal numbers of phenotypically mature NK cells, but the cells are unable to kill MHC class I negative target cells, or produce IFNγ.

NK cell receptors

Killer immunoglobulin-like receptors recognize MHC class I

The killer immunoglobulin-like receptors, or KIRs, are members of the immunoglobulin superfamily. They are present on the majority of CD56low NK cells, with each individual NK cell expressing a random selection of KIRs. Almost none of the CD56hi NK cells express KIRs.

KIRs fall into two main subsets:

The KIRs are then further classified by whether they have a long (L) or short (S) cytoplasmic tail. KIRs with long tails are inhibitory and those with short tails are activating (Fig. 10.4). For example, the inhibitory receptor KIR2DL1 has two immunoglobulin domains and a long cytoplasmic tail. It binds alleles of HLA-C that have a lysine residue at position 80 (HLA-C2 alleles). Its activating counterpart, KIR2DS1 also binds HLA-C2 alleles, but with lower affinity. The ligands of most other activating KIRs are not yet known.

Inhibitory KIRs therefore allow NK cells to recognize and respond to cells that have downregulated specific HLA molecules. This is likely to explain genetic associations whereby those individuals who have both a particular KIR and its cognate HLA molecule experience better outcomes in some viral diseases such as hepatitis B and C. The normal functions of the activating KIRs are unknown, although the presence of activating KIR in the donor is associated with better outcomes when hematopoietic stem cell transplantation is used as a treatment for some leukemias.

NK cells in mice do not express KIRs. Instead, they use Ly49 receptors, which are members of the lectin-like receptor family. Like KIRs, Ly49 receptors come in inhibitory and activating forms, bind to specific MHC class I molecules, and are expressed stochastically. Unlike KIRs, which recognize the top of the peptide binding groove of MHC class I, Ly49 receptors recognize the underside of the molecule. Ly49 and KIRs are unrelated molecules that perform the same function in different species, providing an interesting illustration of convergent evolution.

The lectin-like receptor CD94 recognizes HLA-E

The lectin-like receptor CD94 is present on the majority of CD56hi NK cells, a large subset of CD56low NK cells and is also found on a small subset of CTLs. It covalently associates with different members of another group of lectin-like receptors called NKG2, and the dimers are expressed at the cell membrane.

There are at least six members of the NKG2 family (NKG2A-F), of which all except NKG2D associate with CD94. NKG2A-CD94 is an inhibitory receptor that blocks NK cell activation. By contrast, CD94-NKG2C is an activating receptor (Fig. 10.5). The ligand for both CD94-NKG2A and CD94-NKG2C is HLA-E, although the inhibitory CD94-NKG2A has greater affinity for HLA-E than its activating counterpart. The function of CD94-NKG2A is to allow NK cells to recognize and respond to cells, such as those that are virally infected or cancerous, that are expressing low levels of MHC class I molecules

The HLA-E gene locus encodes an MHC class I-like molecule. These are sometimes called non-classical class I molecules, or class Ib molecules, to distinguish them from the classical MHC molecules that present antigen to CTLs. The function of HLA-E is to present peptides from other MHC class I molecules. The leader peptides from other MHC molecules are transported to the endoplasmic reticulum and are loaded into the peptide binding groove of HLA-E molecules, stabilizing them and allowing them to be transported to the plasma membrane (Fig. 10.6). Cells lacking classical MHC class I molecules do not express HLA-E at the cell surface. Thus, surface HLA-E levels provide a sensitive mechanism for monitoring global MHC class I expression by the cell.

Cancerous and virally-infected cells are recognized by NKG2D

Like other NKG2 receptors, NKG2D is a member of the C-type lectin receptor family, but unlike other NKG2 molecules, NKG2D does not associate with CD94, instead forming a disulphide-linked homodimer (Fig. 10.7). It is an activating receptor expressed by all circulating NK cells.

In humans, the ligands for NKG2D are the MHC class I-like molecules ULBP1–3, MICA and MICB. Expression of these molecules is upregulated by a variety of cellular stresses including heat shock, oxidative stress, proliferation and viral infection. Thus, NKG2D allows NK cells to recognize cells that are stressed, including virally infected and cancerous cells. For this reason, some viruses encode immune evasion proteins that interfere with NKG2D ligand expression, and some cancers produce soluble NKG2D ligands that block NKG2D recognition of its ligands at the cell surface.

The activating NK cell receptor NKp46 is present on all NK cells, and indeed is currently considered to be the best pan-species marker of NK cells. This receptor has been reported to recognize some viral hemagglutinins, and thus may provide another way for NK cells to recognize virally infected cells directly. Another activating receptor, NKp44, may also be able to recognize viral hemagglutinins.

NK cells can also recognize antibody on target cells using Fc receptors

The Fc receptor CD16 (FcγRIII) is expressed by all CD56low NK cells, but not by CD56hi cells. CD16 binds antibody bound to target cells, activating the NK cell so that it degranulates, mediating antibody dependent cell-mediated cytotoxicity (ADCC) (Fig. 10.8). Historically, this was referred to as K cell activity, but this function may also be performed by other cell types with Fc receptors, including T cells. NK cell-mediated ADCC requires both an adaptive immune stimulus (cells coated with antibody) and an innate immune effector mechanism (NK cells) and is thus an example of cross-talk between the innate and adaptive immune systems.

The balance of inhibitory and activating signals determines whether an NK is activated

During an interaction with a target cell, an NK cell must decide between cytotoxic action and inaction. This decision is thought to depend on the coordination of intracellular signaling pathways, and may involve the balance between activating and inhibitory signals.

Both the KIRs and CD94-associated lectin-like receptors occur as inhibitory or activating receptors.

As well as inhibitory receptors that recognize MHC class I, NK cells express inhibitory receptors for collagens (LAIR1, CD305) and sialic acid (siglecs). These may affect the balance of activation and inhibition at locations where these are present in large amounts, such as in tissues.

It is not yet known precisely how the balance of activation and inhibition is resolved. To degranulate, NK cells require a longer contact period with their targets than CTLs do. This is thought to reflect more complex processing that must occur to integrate activating and inhibitory signals at the NK cell immunological synapse (Fig. 10.9).

Cytoxicity

Cytotoxicity is effected by direct cellular interactions, granule exocytosis, and cytokines

CTLs and NK cells use a variety of different mechanisms to kill their targets. These include:

All of these mechanisms culminate in target cell death by apoptosis. Apoptosis is a form of programmed cell death in which the nucleus fragments and the cytoplasm, plasma membranes and organelles condense into apoptotic bodies and are digested. Any remnants are phagocytosed by tissue macrophages.

Apoptosis is usually mediated by a family of proteases called the caspases. There are two caspase-dependent pathways of apoptosis:

There are also caspase-independent pathways of apoptosis. All of these may be triggered by CTLs and NK cells. The target cell remains in control of its internal processes throughout apoptosis. Thus CTLs and NK cells effectively instruct their targets to commit suicide (Fig. 10.10).

CTL and NK cell granules contain perforin and granzymes

Activated CTLs and resting CD56low NK cells contain numerous cytoplasmic granules called lytic granules. Upon recognition of a target cell, these granules polarize to the site of contact, the immunological synapse, releasing their contents into a small cleft between the two cells (Fig. 10.11). The lytic granules contain the pore-forming protein perforin, as well as a series of granule-associated enzymes, called granzymes.

Perforin is a monomeric pore-forming protein that is related both structurally and functionally to the complement component C9.

Perforin is inactive when located within the granules, but undergoes a conformational activation, which is Ca2+ dependent. Like C9, perforin is able to form homopolymers, inserting into the membrane to form a circular pore of approximately 16 nm diameter. Unlike C9, perforin is able to bind membrane phospholipids directly in the presence of Ca2+ (Fig. 10.12).

Perforin-deficient mice show greatly reduced cytotoxicity. The fact that some cytotoxicity remains demonstrates that other mechanisms contribute to CTL- and NK cell-mediated death. Some of the residual killing is likely to come from the Fas ligand and TNF pathways.

Granzymes are serine proteases that are released from the lytic granules alongside perforin. Once perforin has formed a pore in the cell membrane, granzymes may enter the target cell cytoplasm and cleave a number of substrates, leading to apoptosis via the intrinsic pathway:

Granzymes other than A and B have been identified, although mice with these genes knocked out are less severely affected than granzyme A and B knockout mice, suggesting that A and B are the most important death-inducing granzymes. Some of these minor granzymes, such as granzyme C, contribute to apoptosis via a caspase dependent pathway whereas others, such as granzyme K, seem to act in a manner similar to that of granzyme A. The large number of granzymes is likely to provide multiple pathways to trigger apoptosis, ensuring that cell death ensues.

Some cell types are resistant to cell-mediated cytotoxicity

A number of cell types display some resistance to cell-mediated cytotoxicity, including: the CTLs and NK cells themselves. CTLs and NK cells can be killed by other cytotoxic effector cells, but do not destroy themselves when they kill a target cell. A number of mechanisms contribute to this protection:

Neurons, hepatocytes and some placental cell populations are resistant to CTL and NK cell attack under normal circumstances. These cells express little or no MHC class I and for this reason, they are largely resistant to CTL-mediated cytotoxicity. They would, however, be expected to be susceptible to killing by NK cells. They evade NK cell killing in a number of ways:

Cytokine stimulated CTL and NK cells are able to kill these cell types in vitro, and under inflammatory conditions, CTL and NK cells can kill neurons and hepatocytes in vivo. Therefore, these cell types are only resistant to cell-mediated cytotoxicity in the absence of inflammation or infection.

Non-lymphoid cytotoxic cells

A number of non-lymphoid cells may be cytotoxic to other cells or to invading microorganisms, such as bacteria or parasites. Macrophages and neutrophils may phagocytose cells and debris in a non-specific way, but also express FcγRI and FcγRII, which allow them to recognize antibody-coated target cells. Eosinophils also recognize antibody-coated targets via Fc receptors, triggering degranulation.

Macrophages and neutrophils primarily kill target cells by phagocytosis

In general, macrophages and neutrophils destroy pathogens by internalizing them and barraging them with toxic molecules and enzymes within the phagolysosome. These include:

If the target is engaged by surface receptors but is too large to phagocytose, the phagosome may fail to internalize its target. In this case, molecules from the phagolysosome may be released into the extracellular environment and contribute to localized cell damage. This is called ‘frustrated phagocytosis’. Frustrated phagocytosis can be considered a type of ADCC, but unlike ADCC mediated by NK cells, the mediators produced by the phagocyte damage the target cell, inducing necrosis rather than apoptosis.

Activated macrophages also secrete TNFα, which can induce apoptosis in a similar way to CTLs and NK cells. Macrophages can therefore induce necrosis, apoptosis or a combination of both, depending on the state of activation of the macrophages and the target cell involved.

Eosinophils kill target cells by ADCC

Mature eosinophils contain two types of granules: ‘specific’ granules are unique to eosinophils and have a crystalloid core that binds the dye eosin, whereas ‘primary’ granules are similar to those found in other cells of the granulocyte lineage. Eosinophils are only weakly phagocytic. They are capable of ingesting some bacteria following activation, but are less efficient than neutrophils at intracellular killing.

The major function of eosinophils appears to be the secretion of various toxic granule constituents following activation. They are therefore effective at extracellular killing of microorganisms, particularly of large parasites such as schistosomes.

Eosinophil degranulation can be triggered in a number of ways:

Different modes of activation can alter the balance of toxic proteins released during degranulation, although the details of this are not yet understood.

The components of the eosinophil specific granule include:

Eosinophils are prominent in the inflammatory lesions of a number of diseases, particularly atopic disorders of the gut, skin and respiratory tract, where they are often closely associated with fibrotic reactions. Examples are atopic eczema, asthma, and inflammatory bowel disease. Although eosinophils may play some regulatory role in these conditions, such as inactivating histamine, their toxic products and cytotoxic mechanisms are a major cause of the tissue damage. For example, in asthma, MBP can kill some pneumocytes and tracheal epithelial cells while EPO kills type II pneumocytes. MBP can also induce mast cells to secrete histamine, so exacerbating allergic inflammation.

Further reading

Cheent K., Khakoo S.I. Natural killer cells: integrating diversity with function. Immunology. 2009;126:449–457.

Colonna M. Interleukin-22-producing natural killer cell and lymphoid tissue inducer-like cells in mucosal immunity. Immunity. 2009;31:15–23.

Colucci F., Caligiuri M.A., Di Santo J.P. What does it take to make a natural killer? Nat Rev Immunol. 2003;3:413–425.

Cullen S.P., Martin S.J. Mechanisms of granule-dependent killing. Cell Death Differ. 2008;15:251–262.

Di Santo J.P. A defining factor for natural killer cell development. Nat Immunol. 2009;10:1051–1052.

Dustin M.L., Long E.O. Cytotoxic immunological synapses. Immunol Rev. 2010;235:24–34.

Joncker N.T., Raulet D.H. Regulation of NK cell responsiveness to achieve self-tolerance and maximal responses to diseased target cells. Immunol Rev. 2008;224:85–97. 2010

Kärre K. Natural killer cell recognition of missing self. Nat Immunol. 2008;9:477–480.

Lanier L.L. Up on the tightrope: natural killer cell activation and inhibition. Nat Immunol. 2008;9:495–502.

López-Larrea C., Suárez-Alvarez B., López-Soto A., et al. The NKG2D receptor: sensing stressed cells. Trends Mol Med. 2008;14:179–189.

Rothenberg M.E., Hogan S.P. The Eosinophil. Annu Rev Immunol. 2006;24:147–174.

Vivier E., Tomasello E., Baratin M., et al. Functions of natural killer cells. Nat Immunol. 2008;9:503–510.

Weninger W., Manjunath N., von Adrian U.H. Migration and differentiation of CD8+ T cells. Immunol Rev. 2002;186:221–233.