The immune system and disease

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Chapter 3 The immune system and disease

Anatomy and principles of the immune system

Immunity can be defined as protection from infection, whether it be due to bacteria, viruses, fungi or multicellular parasites. Like other organs involved in human physiology, the immune system is composed of cells and molecules organized into specialized tissues (Fig. 3.1).

The primary lymphoid organs are where the cells originate. Cells and molecules of the immune system circulate in the blood; immune responses do not take place there but are at the site of infection (typically the mucosa or skin). They are then propagated and refined in the secondary lymphoid organs (e.g. lymph nodes). After resolution of the infection, immunological memory specific for the pathogen resides in cells (lymphocytes) in the spleen and lymph nodes, as well as being widely secreted in a molecular form (antibodies).

Cells involved in immune responses: origin and function

All immune cells have a common source in the pluripotent stem cells generated in the bone marrow (Fig. 3.1). They have diverse functions (Table 3.1). T lymphocytes undergo ‘education’ in the thymus to avoid self-recognition, and populate the peripheral lymphoid tissue, where B lymphocytes also reside. Both sets of lymphocytes undergo activation in the peripheral tissue, to become mature effector cells. B lymphocytes may further differentiate into antibody-secreting plasma cells. Lymphoid tissue is frequently found at mucosal surfaces in non-encapsulated patches, termed mucosa-associated lymphoid tissue (MALT).

The immune system

Cells and molecules involved in immune responses are classified into innate and adaptive systems:

There are also non-immunological barriers that are involved in host protection, and very often it is the lowering of these that allows a pathogen to take a foothold (Table 3.2).

Table 3.2 Non-immunological host defence mechanisms

Normal barriers

Events that may compromise barrier function

Physical barriers

 

 Skin and mucous membranes

Trauma, burns, i.v. cannulae

 Cough reflex

Suppression, e.g. by opiates, neurological disease

 Mucosal function

Ciliary paralysis (e.g. smoking)

Increased mucus production (e.g. asthma)

Abnormally viscid secretions (e.g. cystic fibrosis)

Decreased secretions (e.g. sicca syndrome)

 Urine flow

Stasis (e.g. prostatic hypertrophy)

Chemical barriers

Low gastric pH (gastric acid secretion inhibitors)

Resistance to pathogens provided by commensal skin and gut organisms

Changes in flora (e.g. broad-spectrum antibiotics)

The immune system is immensely powerful, in terms of its ability to inflame, damage and kill, and it has a capacity to recognize a myriad of molecular patterns in the microbial world. However, immune responses are not always beneficial. They can give rise to a range of autoimmune and inflammatory diseases, known as immunopathologies. In addition, the immune system may fail, giving rise to immune deficiency states. These conditions are grouped under the umbrella of clinical immunology.

A major feature of the immune system is the complexity of the surface-bound, intracellular and soluble structures that mediate its functions. In particular, it is necessary to be aware of the CD (clusters of differentiation) classification (Box 3.1) and the functions of cytokines and chemokines.

Cells and molecules of the innate immune system

Innate immunity provides immediate, first-line, host defence. The key features of this system are shown in Table 3.3. It is present at birth and remains operative at comparable intensity into old age. Innate immunity is mediated by a variety of cells and molecules (Table 3.4). Activation of innate immune responses is mediated through interaction between the:

Table 3.3 Features of the innate and adaptive immune responses

Innate Adaptive

No memory: quality and intensity of response invariant

Memory: response adapts with each exposure

Recognizes limited number of non-varying, generic molecular patterns on, or made by, pathogens

Recognizes vast array of specific antigensa on, or made by, pathogens

Pattern recognition mediated by a limited array of receptors

Antigen recognition mediated by a vast array of antigen-specific receptors

Response immediate on first encounter

Response on first encounter takes 1–2 weeks; on second encounter 3–7 days

a Antigen is a molecular structure (protein, peptide, lipid, carbohydrate) that generates an immune response.

Activation of certain cells in the innate immune system leads to activation of the adaptive immune response (see p. 58).

The dendritic cell is especially involved in this process, and forms a bridge between innate and adaptive systems.

Neutrophils

Neutrophils (see p. 413) phagocytose and kill microorganisms. They are derived from the bone marrow, which can produce between 1011 (healthy state) and 1012 (during infection) new cells per day. In health, neutrophils are rarely seen in the tissues.

Neutrophil phagocytosis is activated by interaction with bacteria, either directly or after bacteria have been coated (opsonized) to make them more ingestible (Fig. 3.3). The contents of neutrophil granules are released both intracellularly (predominantly azurophilic granules) and extracellularly (specific granules) following fusion with the plasma membrane. Approximately 100 different molecules in neutrophil granules (Table 3.5) kill and digest microorganisms, for example:

Table 3.5 Contents and function of key neutrophil granules

Function Primary or azurophilic granules Secondary or specific granules

Antibacterial

Lysozyme
Defensins
Myeloperoxidase (MPO)
Proteinase-3
Elastase

Respiratory burst components (e.g. cytochrome b558) producing reactive oxygen metabolites, such as hydrogen peroxide, hydroxyl radicals and singlet oxygen

Cathepsins

Lysozyme

Bactericidal/permeability increasing protein (BPI)

Lactoferrin

Cell movement

 

Collagenase

 

CD11b/CD18 (adhesion molecule)

 

N-formyl-methionyl-leucylphenylalanine receptor (FMLP-R)

Granule release is initiated by the products of bacterial cell walls, complement proteins (e.g. inactive complement 3b, iC3b), leukotrienes (LTB4) and chemokines (e.g. CXCL8, also known as IL-8) and cytokines such as tumour necrosis factor α (TNF-α).

Eosinophils

In contrast to neutrophils, several hundred times more eosinophils are present in the tissues than in the blood, particularly at epithelial surfaces where they survive for several weeks. The main role of eosinophils is protection against multicellular parasites such as worms (helminths). This is achieved by the release of pro-inflammatory mediators, which are toxic, cationic proteins. In populations and societies in which such parasites are rare, eosinophils contribute mainly to allergic disease, particularly asthma (see p. 827). Eosinophils have two types of granules:

Eosinophils are activated and recruited by a variety of mediators via specific surface receptors, including complement factors and leukotriene (LT) B4. In addition, the CC chemokines eotaxin-1 (CCL11) and eotaxin-2 (CCL24) are highly selective in eosinophil recruitment. Receptors are also present for the cytokines IL-3 and IL-5, which promote the development and differentiation of eosinophils.

Mast cells and basophils

Mast cells and basophils share features in common, especially in containing:

Mast cells are found in tissues (especially skin and mucosae) and basophils in the blood. Both mast cells and basophils release pro-inflammatory mediators which are either pre-formed or synthesized de novo (Table 3.6).

Table 3.6 Mast cell and basophil mediators

Mediators Effects

Pre-formed:

 

 Histamine

Vasodilatation

Vascular permeability ↑

Smooth muscle contraction in airways

 Proteases

Digestion of basement membrane causes ↑vascular permeability and aids migration

 Proteoglycans (e.g. heparan)

Anticoagulant activity

Synthesized de novo:

 

 Platelet-activating factor (PAF)

Vasodilator

 LTB4, LTC4, LTD4

Neutrophil and eosinophil activators and chemoattractants

Vascular permeability ↑

Bronchoconstrictors

 Prostaglandins (mainly PGD2)

Vascular permeability ↑

 

Bronchoconstrictors

 

Vasodilators

Histamine is a low-molecular-weight amine (111 Da) with a blood half-life of less than 5 minutes; it constitutes 10% of the mast cell’s weight. When injected into the skin, histamine induces the typical ‘weal and flare’ or ‘triple’ response: reddening (erythema) due to increased blood flow, swelling (weal) due to increased vascular permeability, and distal vascular changes (flare) due to effects on local axons.

The complement-derived anaphylatoxins C3a, C4a and C5a activate basophils and mast cells, as does IgE. The mast cell also has a role in the early response to bacteria through release of TNF-α, in cell recruitment to inflammatory sites such as arthritic joints, in promotion of tumour growth by enhancing neovascularization and in allograft tolerance.

Monocytes and macrophages

Cells of the monocyte/macrophage lineage are highly sophisticated phagocytes. Monocytes are the blood form of a cell that spends a few days in the circulation before entering into the tissues to differentiate into macrophages, and possibly some types of dendritic cells.

Tissue macrophages

A key role of tissue macrophages is the maintenance of tissue homeostasis, through clearance of cellular debris, especially following infection or inflammation. They are responsive to a range of pro-inflammatory stimuli, using their pattern recognition receptors (PRR) to recognize pathogen-associated molecular patterns (PAMPs). Once activated, they engulf and kill microorganisms, especially bacteria and fungi. In doing so they release a range of pro-inflammatory cytokines and have the capacity to present fragments of the microorganisms to T lymphocytes (see below) in a process called antigen presentation. Recent evidence suggests that evolutionarily conserved molecular patterns in mitochondria (organelles that originally derived from bacteria) can also activate monocytes. These damage-associated molecular patterns (DAMPs) could play a major role in the systemic inflammatory response that follows extensive tissue damage (e.g. following ischaemic injury).

It has been observed that some PAMPs induce the cytoplasmic assembly of large oligomeric structures of PRRs termed inflammasomes. There are numerous examples: members of the Nod-like receptor (NLR) family can be activated by stimuli such as viruses, bacterial toxins, and interestingly, crystallized endogenous molecules, including urate. Inflammasomes have potent effects in activating caspases, leading to processing and secretion of pro-inflammatory cytokines such as IL-1β and IL-18.

Macrophages have pro-inflammatory and microbicidal capabilities similar to those of neutrophils. Under activation conditions, antigen presentation (see p. 57, 58) is enhanced and a range of cytokines secreted, notably TNF-α, IL-1 and IFN-γ. These are necessary for the removal of certain pathogens that live within mononuclear phagocytes (e.g. mycobacteria). Macrophages and related cells may also undergo a process termed autophagy (p. 32, Ch. 2). This self-cannibalization is a critical property of many cell types under starvation conditions, but is used by the immune system to destroy intracellular pathogens such as Mycobacterium tuberculosis, which otherwise persist within cells and block normal antibacterial processes. Autophagy is also a means of enhancing antigen presentation pathways.

Tissue macrophages involved in chronic inflammatory foci may undergo terminal differentiation into multinucleated giant cells, typically found at the site of the granulomata characteristic of tuberculosis and sarcoidosis (see p. 845).

Dendritic cells

The major function of dendritic cells (DCs) is activation of naive T lymphocytes to initiate adaptive immune responses; they are the only cells capable of this. The definition of a dendritic cell is one that has:

This is a powerful cell type that functions as a critical bridge between the innate and adaptive immune systems.

Types of dendritic cell

The major types are the myeloid DC (mDC), the plasmacytoid DC (pDC) and a variety of specialized DCs found in tissues that resemble mDCs (e.g. the Langerhans cell in the skin, see Fig. 24.1). DCs have several distinctive cell surface molecules, some of which have pathogen-sensing activity (e.g. the antigen uptake receptor DEC205 on mDCs) whilst others are involved in interaction with T lymphocytes (Table 3.7). Immature mDCs and pDCs are present in the blood, but at very low levels (<0.5% of lymphocyte/monocyte cells).

Pathogen sensing is a key component of the function of immature DCs, as well as monocytes/macrophages, and is achieved through expression of a limited array of specialized PRR molecules capable of binding to structures common to pathogens, aided by long cell dendrites and pinocytosis (constant ingestion of soluble material).

PRRs include:

The key principle at play here is that the immune system has devised a means of identifying most types of invading microorganisms by using a limited number of PRRs recognizing common molecular patterns, or PAMPs. This recognition event has been termed a ‘danger signal’: it alerts the immune system to the presence of a pathogen. Sensing danger is a key role of the DC and a key first step towards activation of the adaptive immune system.

DCs and T cell activation

In a sequence of events that spans 1–2 days, immature DCs are activated by PAMPs or DAMPs in the tissues binding to a PRR on DCs. The immature pDC is a small rounded cell that develops dendrites upon activation and secretes enormous quantities of IFN-α, a potent antiviral and pro-inflammatory cytokine. On activation, the DC migrates to the local lymph node with the engulfed pathogen. During migration the DC matures, changing its shape, gene and molecular profile and function within a matter of hours to take on a mature form, with altered functions (Table 3.9, Fig. 3.5), in particular upregulating machinery required to activate T lymphocytes. Once in the lymph node, the mature DC interacts with naive T lymphocytes (antigen presentation), resulting in two key outcomes:

Table 3.9 Myeloid dendritic cell (DC) maturation

Immature mDC Mature mDC

Highly pinocytotic

Ceases pinocytosis

Low level expression of molecules required for T lymphocyte activation

Upregulates CD80, CD86 and HLA molecules

Low level expression of machinery required to process and present microbial antigens

Begins to process microbial antigens (break down into small peptides) in readiness to present them to T lymphocytes (using HLA molecules)

Generally localized and sedentary

Begins active migration to local lymph node

Minimal secretion of cytokines

Active secretion of cytokines in readiness to stimulate T lymphocytes; in particular IL-12

mDC, myeloid dendritic cell.

The mature DC provides three major signals to naive T cells Fig. 3.5):

Hla molecules and antigen presentation

On the short arm of chromosome 6 is a collection of genes termed the major histocompatibility complex (MHC; known as the human leucocyte antigens, or HLA in man), which plays a critical role in immune function. MHC genes code for proteins expressed on the surface of a variety of cell types that are involved in antigen recognition by T lymphocytes. The T lymphocyte receptor for antigen recognizes its ligand as a short antigenic peptide embedded within a physical groove at the extremity of the HLA molecule (Fig. 3.6).

The HLA genes are particularly interesting for clinicians and biologists. First, differences in HLA molecules between individuals are responsible for tissue and organ graft rejection (hence the name ‘histo’(tissue)-compatibility). Second, possession of certain HLA genes is linked to susceptibility to particular diseases (Table 3.10).

Table 3.10 HLA associations with immune-mediated and infectious diseases

Disease process Disease HLA type

Autoimmunity

Type 1 diabetes

Class II:

 

 DQA1*0301/DQB1*0302 (susceptibility)

 DQA1*501/DQB1*201 (susceptibility)

 DQA1*0102/DQB1*0602 (protection)

 

Class I:

 

 HLA-A24; HLA-B*18; HLA-B*39

Multiple sclerosis

DRB1*1501 (susceptibility)

Rheumatoid arthritis

DRB1*0404 (susceptibility)

Autoimmune hepatitis

DRB1*03 and DRB1*04 (susceptibility)

Goodpasture’s syndrome (anti-glomerular basement membrane disease)

HLA-DRB1*1501 (susceptibility)

Pemphigus vulgaris

DRB1*0402; DQB1*0503 (susceptibility)

Inflammatory

Coeliac disease

DQA1*0501/DQB1*0201 (susceptibility)

Ankylosing spondylitis

HLA-B27 (susceptibility)

Psoriasis

HLA-Cw*0602 (susceptibility)

Infectious

Human immunodeficiency virus infection

HA-B27; HLA-B*51; HLA-B*57 (associated with slow progression of disease)

HLA-B*35 (associated with rapid progression)

The human major histocompatibility complex

The human MHC comprises three major classes (I, II and III) of genes involved in the immune response (Fig. 3.7).

HLA classes

Classical class I HLA genes (also termed Ia), are designated HLA-A, HLA-B and HLA-C. Each encodes a class I α chain, which combines with a β chain to form the class I HLA molecule (Fig. 3.6). While there are several types of α chains, there is only one type of β chain, β2 microglobulin. The HLA class I molecule has the role of presenting short (8–10 amino acids) antigenic peptides to the T cell receptor on the subset of T lymphocytes that bear the co-receptor CD8. As an example of HLA polymorphism, there are nearly 200 allelic forms at the A gene locus. Class I HLA molecules are expressed on all nucleated cells.

Non-classical HLA class I genes are less polymorphic, have a more restricted expression on specialized cell types, and present a restricted type of peptide or none at all. These are the HLA-E, F and G (Ib genes) and MHC class I-related (MIC, or class Ic) genes, A and B. The products of these genes are predominantly found on epithelial cells, signal cellular stress and interact with lymphoid cells, especially natural killer cells (see p. 61, 62).

The class II genes have three major subregions, DP, DQ and DR. In these subregions are genes encoding A and B genes that combine to form dimeric αβ molecules that present short (12–15 amino acid) peptides to T lymphocytes that bear the CD4 co-receptor. Class II HLA genes (apart from DRA) are highly polymorphic. Other genes in this region encode proteins with key roles in antigen presentation (e.g. TAP, HLA-DM, HLA-DO, proteasome subunits; see below). Class II HLA genes are expressed on a restricted cohort of cells that go by the general term of antigen presenting cells (APCs; DCs, monocyte/macrophages, B lymphocytes).

HLA class III genes encode proteins that can regulate/modify immune responses, e.g. tumour necrosis factor (TNF), heat shock protein (HSP) and complement protein (C2, C4).

Antigen presentation

HLA molecules bind short peptide fragments which are processed (‘chopped up’) from larger proteins (antigens) derived from pathogens. The peptide–HLA complex is presented on antigen presenting cells (APCs) for recognition by T cell receptors (TCRs) on T lymphocytes. There are three major routes to antigen processing and presentation:

image The endogenous route (Fig. 3.8) is a property of all nucleated cells: the internal milieu is sampled to generate peptide–HLA class I complexes for display (‘presentation’) on the cell surface. In a healthy cell, the peptides are derived from self-proteins in the cytoplasm (Fig. 3.8) and are ignored by the immune system. In a virus-infected cell, viral proteins are processed and presented. The resulting viral peptide–HLA class I complex is presented to CD8 T lymphocytes that have cytotoxic (killer) function. In an immune response against a virus infection, CD8 T lymphocytes recognizing viral peptide–HLA complexes on the surface of an infected cell will kill it as a means to limit and eradicate infection.

image The exogenous route (Fig. 3.9) is a property of APCs: the external milieu is sampled. Antigens are internalized, either in the process of phagocytosis of a pathogen, through pinocytosis, or through specialized surface receptors (e.g. for antigen/antibody/complement complexes). The antigen is broken down by a combination of low pH and proteolytic enzymes for ‘loading’ into HLA class II molecules. At the APC surface the pathogen peptide–HLA class II complex is presented to and able to interact with CD4 T lymphocytes. Presentation by DCs can initiate an adaptive immune response by activating a naive, pathogen-specific CD4 T lymphocyte. Presentation by monocyte/macrophages and B lymphocytes can maintain and enhance this response by activating effector and memory pathogen-specific CD4 T lymphocytes.

image Cross-presentation refers to the ability of some APCs (mainly DCs) to internalize exogenous antigens and process them through the endogenous route (Fig. 3.8). This is an essential component in the activation of CD8 cytotoxic T cell responses against a virus.

Cells and molecules of the adaptive immune system

The information gained by DCs that interact with a pathogen is passed on, in the form of signals 1–3 (Fig. 3.5b). These activate T lymphocytes in the adaptive immune system, which recognize the same pathogen. T lymphocytes may be involved in pathogen removal directly (e.g. by killing) or indirectly (e.g. by recruiting B lymphocytes to make specific antibody).

Antigen receptors on T and B lymphocytes

One of the key features of the adaptive immune system is specificity for antigen. For example, if you are immunized against the measles virus, you do not have immunity to hepatitis B, and vice-versa. Specificity is conferred by two types of receptor: the TCR on T lymphocytes and an equivalent on B lymphocytes, the BCR. BCRs are also termed surface immunoglobulin (sIg) and differ from TCRs in also being secreted in large quantities by end-stage B lymphocytes (plasma cells) as soluble immunoglobulins, also known as antibodies.

To maintain protection against the multiplicity of pathogens in our environment, each of us generates great diversity amongst TCRs and antibodies. This is achieved through a mechanism shared by both TCR and antibody, in which distinct families of genes are encoded in the germline, each family (called constant, variable, diversity and joining) contributing a sequence to part of the receptor. Recombination between randomly selected members of each family ensures diversity in the end product. Recombination frequently involves base deletions and additions, adding to the diversity. In the case of antibodies, the result is a potential capacity of >1014 different antibody molecules; for TCRs it may be as high as 1018.

Immunoglobulins

In structural terms, antibodies have four chains; two identical heavy and two identical light chains (Fig. 3.10). Each chain contains both highly variable and essentially constant regions. The variable parts of the heavy and light chains pair to form the potentially diverse part of the antibody molecule that binds antigen. The constant region of the heavy chain dictates the function of the antibody, and belongs to one of the classes M, G1–4, A1–2, D and E, giving rise to antibodies called IgM, IgG1–4, IgA1–2, IgD and IgE. The characteristics of these different isotypes are shown in Table 3.11.

T lymphocyte development and activation

T lymphocytes are generated from precursors in the bone marrow, which migrate to the thymus (Fig. 3.11). Only 1% of the cells that enter the thymus will leave it as naive T lymphocytes to populate the lymph nodes. This process (termed thymic selection) leads to a cohort of cells (Table 3.12) with:

Thus, during thymic education most TCRs are rejected for further use (negative selection), either because they are unable to bind self HLA molecules, or because they bind with too strong an affinity, which would run the risk of self-reactivity and autoimmune disease. The chosen TCRs (positive selection) have low/intermediate affinity for self HLA molecules. During post-thymic activation of T lymphocytes in the lymph node, TCR interaction with HLA has to be bolstered by additional signals (co-stimulation) provided by DCs. This ensures that T lymphocytes are only activated when the checkpoint of DC maturation has been passed, which will only happen in the presence of pathogens.

Most naive T lymphocytes are resident in the lymph nodes or spleen, whilst 2% are present in the blood, representing a recirculating pool. Naive T lymphocytes are activated for the first time in the lymph node by antigens presented to their TCRs as short peptides bound to MHC molecules on the surface of DCs (Fig. 3.5). Provision of signals 1–3 (see p. 55) sets off an intracellular cascade of signalling molecule activation, leading to induction of gene transcription in T lymphocytes.

Nuclear factor kappa B (NF-κB) is a pivotal transcription factor in chronic inflammatory diseases and malignancy. It is found in the cytoplasm bound to an inhibitor IκB which prevents it from entering the nucleus (see Fig. 2.9). It is released from IκB on stimulation of the cell and passes into the nucleus, where it binds to promoter regions of target genes involved in inflammation. It is stimulated by, for example, cytokines, protein C activators and viruses. The outcome is T lymphocyte activation, cell division and functional polarization, which is the acquired ability to promote a selected type of adaptive immune response. These processes take several days to achieve. The best described polarities of T cell responses (Table 3.13) are:

Through cell division, a proportion of the T lymphocytes that are activated in response to a pathogen undertake these effector or regulatory functions, whilst a proportion is assigned to a memory pool. Once established, effector and memory T lymphocytes have lesser requirements for subsequent activation, which can be mediated by monocytes, macrophages and B lymphocytes.

Regulatory T lymphocytes

The generation of B and T lymphocytes provides a potentially vast array of rearranged antigen receptors. Although there are selection processes to remove lymphocytes with ‘dangerous’ avidity for ‘self’ these are not foolproof and the potential for autoreactivity remains. The fact that there is no self-destruction in the vast majority of people implies a state of immunological self tolerance; the controlled inability to respond to self. Several mechanisms operate to maintain this state, including CD4 T lymphocytes that respond to antigenic stimulation by suppressing ongoing immune responses. These regulatory T lymphocytes (Tregs) have different origins, phenotypes and modes of action:

Evidence that Tregs are clinically relevant is given by the example of immune deficiency states in which they are defective. For example, genetic defects in the Foxp3 gene give rise to IPEX (Immune dysregulation, Polyendocrinopathy, Enteropathy, X-linked syndrome). Patients with this rare syndrome have defective Tregs and develop a range of conditions soon after birth, including organ-specific autoimmune disease such as type 1 diabetes. Much research effort is directed at harnessing this natural regulatory potential, for example to control organ graft rejection and autoimmune disease.

Natural killer (NK) cells

These are bone marrow-derived, present in the blood and lymph nodes and represent 5–10% of lymphoid cells. The name is derived from two features. Unlike B and T lymphocytes, NK cells are able to mediate their effector function spontaneously (i.e. killing of target cells through release of perforin, a pore-forming protein) in the absence of previous known sensitization to that target. Also, unlike B and T lymphocytes, NK cells achieve this with a very limited repertoire of germline-encoded receptors that do not undergo somatic recombination. Despite their close resemblance to T and B lymphocytes in morphology, the lack of requirement for sensitization and the absence of gene rearrangement to derive receptors for target cells mean that NK cells are also categorized as a part of the innate immune system. For identification purposes, the main surface molecules associated with NK cells are CD16 (see below) and CD56 (note, NK cells are CD3- and TCR-negative).

The role of NK cells is to kill ‘abnormal’ host cells, typically cells that are virus-infected, or tumour cells. Killing is achieved in similar ways to CTLs. NK cells also secrete copious amounts of IFN-γ and TNF-α, through which they can mediate cytotoxic effects and activate other components of the innate and adaptive immune system. To become activated, NK cells integrate the signal from a potential target cell through a series of receptor-ligand pairings (Table 3.14). These pairings provide activating and inhibitory signals, and it is the overall balance of these that determines the outcome for the NK cell. The balance can be abnormal on a virus-infected or tumour cell, which might have altered expression of HLA molecules, for example, that mark them out for NK cytotoxicity.

Table 3.14 Examples of natural killer (NK) cell receptors

Receptors on NK cells Ligand

Inhibitory:

 

 KIR2DL1

HLA-C molecules

 KIR3DL1

HLA-B molecules

 KIRDL2

HLA-A molecules

 NKG2A

HLA-E molecules

Activating:

 

 CD16 (low-affinity receptor for IgG)

IgG

 NKG2D

MHC class I chain related gene A (MICA)

 KIR2DS1

HLA-C

KIR, killer cell immunoglobulin-like receptor.

In addition, through CD16, which is the low-affinity receptor for IgG (FcgRIIIA), NK cells can kill IgG-coated target cells in a process termed antibody-dependent cellular cytotoxicity (ADCC).

One of the targets of NK cell activating receptors, MICA (non-classical HLA class Ic molecule), is induced under conditions of cellular ‘stress’, such as might arise during infection or neoplastic transformation. Many viruses have developed immunoevasion strategies that avoid presentation of viral proteins to CTLs by interfering with the MHC class I presentation pathway, or circumvent target cell recognition by reducing MICA expression. NK cells detect the reduced levels of MHC class I molecules, which renders infected cells susceptible to killing by NK cells. Likewise, tumours that escape immune surveillance by CTLs through the outgrowth of daughter cells that have low MHC expression also become NK cell targets. That NK cells are vital to antiviral immunity, is indicated by the associations between KIR and susceptibility to chronic infection with viruses, notably the human immunodeficiency virus (see p. 173).

Cell migration

Immune cells are mobile. They can migrate into the lymph node to participate in an evolving immune response (e.g. a pathogen-loaded DC from the skin, or a recirculating naive T lymphocyte), or can migrate from the lymph node, via the blood, to the site of a specific infection in the tissues. Such migration takes place along blood and lymphatic vessels, and is a highly regulated process.

Taking the example of a DC migrating into the lymph node from the tissues via the lymphatics (Fig. 3.12), this is highly dependent upon expression of the chemokine receptor CCR7 by the migrating cell and of its ligand (secondary lymphoid tissue chemokine, SLC or CCL21) by the target tissue. Likewise, circulating naive lymphocytes are CCR7+ and migrate with ease into the lymph nodes from the blood or via tissue recirculation. In addition, naive lymphocytes express L-selectin which binds a glycoprotein cell adhesion molecule (GlyCAM-1) found on the high endothelial venules of lymph nodes. This system can be upregulated in an inflamed lymph node, leading to an influx of naive lymphocytes and the typical symptom of a swollen node.

Migration into inflamed tissue requires:

This process is highly organized and has a similar basis for all immune cells, involving three basic steps: rolling, adhesion and trans-migration. Each of these is dependent on specialized adhesion molecules, as shown in Figure 3.13.

The controlled regulation of these molecules (e.g. LFA-1 expression) is upregulated on T lymphocytes after activation in the lymph node. ICAM-1 expression on tissue endothelium is sensitive to numerous pro-inflammatory molecules and allows immune cells to be guided from the blood into the tissues. Once there, cells move along a gradient of increasing concentration of mediators such as chemokines in the process of chemotaxis.

The immune system in concert

Acute inflammation: events and symptoms

This is the early and rapid host response to tissue injury. Taking a bacterial infection as the classic example:

image Local expansion of pathogen numbers leads to direct activation of complement in the tissues, with ensuing degranulation of mast cells.

image Inflammatory mediators (from mast cells and complement) change the blood flow and attract and activate granulocytes.

image Concomitantly, there are the local symptoms of heat, pain, swelling and redness, and perhaps more systemic symptoms such as fever due to the effect of circulating cytokines (IL-1, IL-6, TNF-α) on the hypothalamus. Indeed, gene mutations that lead to excessive actions of IL-1 (e.g. mutation of the IL1RN gene, which encodes a natural IL-1 antagonist) give rise to rare diseases with just these symptoms, as well as bone erosion and skin rashes, that are treatable with IL-1 blockade using soluble IL-1 receptor antagonist (anakinra) or monoclonal anti-IL-1β antibody.

image Systemically active mediators (especially IL-6) also initiate the production of C-reactive protein (CRP) in the liver.

image Bacterial lysis follows through the actions of complement and neutrophils, leading to formation of fluid in the tissue space containing dead and dying bacteria and host granulocytes (‘pus’).

image At the site of pathogen entry there is often relative tissue hypoxia. The low oxygen tension has the effect of amplifying the responses of innate immune cells and suppressing the response of adaptive immune cell. This is probably an effective means of preventing excessive immune activation, which can result in collateral damage (Fig. 3.14).

image The inflammation may become organized and walled off through local fibrin deposition to protect the host.

image Antigens from the pathogen travel via the lymphatics (which may become visible as red tracks in the superficial tissues – lymphangitis) in soluble form or are carried by dendritic cells to establish an adaptive immune response which, at the first host-pathogen encounter, takes approximately 7–14 days.

image The adaptive immune response leads to activation of pathogen-specific T lymphocytes, B lymphocytes and production of pathogen-specific antibody, initially of the IgM class and of low-moderate affinity and subsequently of the IgG class (or IgA if the infection is mucosal) and of high affinity.

image Resolution of the infection is aided by the scavenging activity of tissue macrophages.

Chronic inflammation: events and symptoms

Inflammation arising in response to immunological insults that cannot be resolved in days/weeks gives rise to chronic inflammation. Examples include infectious agents (chronic viral infections such as hepatitis B and C or intracellular bacteria such as mycobacteria) and environmental toxins such as asbestos and silicon. At the intracellular level, key processes of inflammasome generation and autophagy serve to enhance the chronic inflammatory process. Chronic inflammation is also a hallmark of some forms of allergic disease, autoimmune disease and organ graft rejection.

The common feature of these pathological processes is that the inciting stimulus is not easy to remove. For example, some viruses and mycobacteria remain hidden intracellularly; antigens that incite allergy (allergens) may be constantly present in the host’s environment; self or donated organs are a resident source of antigens. In many ways, the pathology that results is thus inadvertent; the immune system is caught between the repercussions of not dealing with the infection/insult, and the tissue damage that is caused by chronic activation of lymphoid and mononuclear cells.

Chronic inflammation may lead to permanent organ damage or impaired vascular function and can be fatal. If the inciting stimulus is removed, inflammation resolves. However, inflammation returns rapidly (24–48 hours) on re-exposure. This rapid recall response is the basis for patch testing to identify the cause of contact dermatitis, another form of chronic inflammation, and also for the Mantoux test of tuberculosis immunity.

The main immunological event is the presence of a proinflammatory focus comprising T and B lymphocytes and APCs, especially macrophages. If antigen persists, inflammation becomes chronic and the macrophages in the lesion fuse to form giant cells and epithelioid cells. Both Th1 and Th2 reactivity is recognized, but specific syndromes may be polarized towards one or the other (e.g. chronic mycobacterial or viral infection engenders Th1 responses, chronic allergic inflammation Th2).

When the inflammation is sufficiently chronic it may take on the appearance of organized lymphoid tissue resembling a lymph node germinal centre (e.g. in the joints in rheumatoid arthritis, p. 517). There is massive cytokine production by T lymphocytes and APCs, which contributes to local tissue damage. Granulomata, which ‘wall off’ the inciting stimulus, may also arise and result in fibrosis and calcification. Symptoms typically relate to the site of the inflammation and the type of pathology, but there may also be systemic effects such as fever and weight loss.

Crohn’s disease Chronic inflammation is a hallmark of several immune-mediated and autoimmune diseases, but it is often unclear what kick-starts or maintains the inflammatory process. Large scale studies that identify the genetic basis for these disorders (genome-wide association studies, GWAS) are beginning to provide some clues. A good example is Crohn’s disease (CD). Several of the polymorphisms associated with CD reside in genes known to be involved in inflammasome induction, such as NOD2. Cytokine regulation has also emerged as a critical disease pathway in GWAS studies on CD: most notably the IL-23R (IL-23 receptor gene), which influences Th17 cell differentiation. Clues like these point to patients with CD having impaired ability to control or terminate inflammasome activity, as well as a predisposition to make polarized pro-inflammatory cytokine responses. This information can now be exploited to devise novel therapeutic approaches.

Laboratory investigations of the immune system

In the clinical immunology laboratory, proteins and cells can be measured to ascertain the status of the immune system. The results may indicate an undiagnosed inflammatory or infectious disease (e.g. through high C-reactive protein level); a state of immune deficiency (e.g. low concentration of IgG); or a state of immune pathology (e.g. the presence of autoantibodies or allergen-specific IgE).

Examples of the commoner tests and their interpretation are shown in Table 3.15.

Table 3.15 Examining the immune system in the clinical immunology laboratory

  Measurement Interpretation

Proteins

C-reactive protein

Raised levels indicate infection or inflammation

Immunoglobulins

Low levels indicate antibody deficiency, usually a result of underlying disease or primary immunodeficiency. High levels, e.g. ↑ IgM seen in acute viral infection (hepatitis A)

Complement C3 and C4

Low levels indicate consumption of complement in immune complex disease

IgE

Raised levels in allergy; allergen-specific IgE useful to pinpoint the inciting stimulus (e.g. pollen, grass)

Cells

Neutrophils

High levels in bacterial infection; low levels in secondary immune deficiency

Eosinophils

High levels in allergic or parasitic disease

CD4 T lymphocytes

Low levels in HIV infection

Function

Neutrophil respiratory burst

Absent in the immune deficiency chronic granulomatous disease

T lymphocyte proliferation

Abnormally low in primary T cell immune deficiency disease

Autoantibodies (see also Table 11.3 and Box 11.16)

Rheumatoid factor, anti-cyclic citrullinated peptide antibodies (ACPA)

Rheumatoid arthritis

Double-stranded DNA autoantibodies

Systemic lupus erythematosus

Acetylcholine receptor antibodies

Myasthenia gravis

Anti-neutrophil cytoplasmic antibodies (ANCA)

Vasculitis

Mitochondrial

Primary biliary cirrhosis

Clinical immunodeficiency

Secondary (acquired) versus primary immunodeficiency

Most forms of immunodeficiency are secondary to infection (mainly HIV) or therapy (e.g. corticosteroids, anti-TNF-α monoclonal antibody therapy, cytotoxic anticancer drugs, bone marrow ablation pre-transplant). Examples of other secondary immunodeficiencies are:

Primary immunodeficiency is rare and arises at birth as the congenital effect of a developmental defect or as a result of genetic abnormalities (Table 3.16). Gene defects may not become manifest until later in infancy or childhood, and some forms of immunodeficiency typically present in adolescence or adulthood.

Table 3.16 Classification of immunodeficiencies and the main diseases in each category: apart from AIDS, all diseases shown here are primary immunodeficiencies

Immune component Examples of diseases

T lymphocyte deficiency

DiGeorge’s syndrome

Acquired immunodeficiency syndrome/HIV infection

T cell activation defects (e.g. CD3γ chain mutation)

X-linked hyper-IgM syndrome (XHIM; CD40L deficiency)

B lymphocyte deficiency

X-linked agammaglobulinaemia (XLA)

Common variable immunodeficiency (CVID)

Selective IgA deficiency (IgAD)

Combined T and B cell defects

Severe combined immunodeficiency (SCID) (e.g. due to defects in common γ chain receptor for IL-2, -4, -7, -9, -15)

T cell–APC interactions

IFN-γ receptor deficiency

IL-12 and IL-12 receptor deficiency

Neutrophil defects

Chronic granulomatous disease (CGD)

Leucocyte adhesion deficiency (LAD)

Deficiency of complement components

Classical pathway

Alternative pathway

Common pathway

Regulatory proteins

Mannan binding lectin

Clinical features of immunodeficiency

The infections associated with immunodeficiency have several typical features:

The pattern of infection, in terms of the type of organism involved, is indicative (Table 3.17):

Table 3.17 Immune defects and associated infections

The family history may reveal unexplained sibling death; only females of the family affected; or consanguinity, each of which make a primary genetic syndrome more likely. Graft-versus-host disease (GVHD) may arise as a complication of primary or secondary T lymphocyte immunodeficiency. For GVHD to arise, there must be impaired T lymphocyte function in the recipient and the transfer of immunocompetent T lymphocytes from an HLA non-identical donor (see below). GVHD usually arises from therapeutic interventions such as transfusions or transplantation.

Primary immunodeficiency

T and B lymphocyte deficiency

B lymphocyte deficiency

Neutrophil defects

Leucocyte adhesion deficiency (LAD)

This results from defects in integrins (see p. 23). Numerous underlying defects in the gene encoding one of the component chains, CD18, have been described in LAD-I. LAD-I has an autosomal recessive inheritance presenting almost immediately after birth, with delayed umbilical cord separation. Recurrent infections similar to those in chronic granulomatous disease appear during the first decade of life. Blood neutrophil levels are high but cells are absent from the sites of infection, which require aggressive antimicrobial and antifungal treatment, and SCT for cure.

Complement deficiency

The consequences of deficiency of complement proteins can be predicted from their functions (Fig. 3.2).

An unexpected finding is that neisserial infections (e.g. meningitis due to N. meningitidis) are often encountered in patients with complement defects of the membrane attack complex.

Complement regulatory proteins

Deficiency of C1 inhibitor (C1 esterase) deficiency (see also p. 1211) is relatively rare. Since this enzyme is involved in regulation of several plasma enzyme systems (e.g. the kinin system) and is continuously consumed, a single parental chromosome defect resulting in 50% of normal production barely copes with the demand and fails under stress (hence an autosomal dominant effect). As a result, uncontrolled activation of complement and the kinins may occur, leading to oedema of the deep tissues affecting the face, trunk, viscera and the airway, hence the alternative name of hereditary angio-oedema (HAE).

Type I hypersensitivity and allergic disease

Normally host defence can cope with potentially harmful cells and molecules. Under some circumstances, a harmless molecule can initiate an immune response that can lead to tissue damage and death. Such exaggerated, inappropriate responses are termed hypersensitivity reactions or allergic disease.

In Type I (immediate) hypersensitivity, the binding of an antigen to specific IgE bound to its high-affinity receptor on a mast cell surface results in massive and rapid cell degranulation and the inflammatory response outlined on page 53. The antigens involved are typically inert molecules present in the environment (termed allergens; see p. 824).

The immediate effects of allergen exposure are often very florid (early phase response). Allergic disorders also have a second phase, occurring a few hours after exposure and lasting up to several days. These ‘late phase responses’ (LPR) are mediated by Th2 cells recognizing peptide epitopes of the allergen. Recruitment of eosinophils is often a prominent feature.

From a pathological and therapeutic viewpoint, the LPR gives rise to chronic inflammation which is difficult to control. In asthma the LPR gives rise to the prolonged wheezing that can be fatal. Immediate hypersensitivity is usually responsive to antihistamines but the LPR is not, requiring powerful immune modulators such as corticosteroids.

In immunopathological terms, in the LPR:

Table 3.18 Mediators involved in the allergic response

What makes an allergen so powerful? Several allergens are proteolytic enzymes allowing them to cross skin and mucosal barriers. They are often contained within small, aerodynamic particles (e.g. pollen grains) that gain access to nasal and bronchial mucosa.

Why do some people react and others not? The tendency to develop allergic responses (known as atopy) shows strong heritability. Between 20% and 30% of the UK population is atopic and two, one or no atopic parents pass on the atopic trait to their children with a risk of 75%, 50% and 15%, respectively. In developing nations the tendency to allergy is estimated at one-tenth of the rate in industrialized countries. Amongst the predisposing genes are those encoding the β chain of the high-affinity receptor for IgE and IL-4, both strongly associated with Th2 pathways. The presence of Th2 cells recognizing allergens is the pathological hallmark of allergy.

What environmental factors are involved? Early exposure to allergens (even in utero) may be a factor in developing atopy. Over-zealous attention to cleanliness (the hygiene hypothesis) in developed societies (use of antibiotics, reduced exposure to pathogens which might favour a Th1-like environment) may favour a reduction in Treg activity. This environmental factor is shown by the rapid increase of allergy in the Eastern part of Germany following reunification.

In clinical terms, approximately two-thirds of atopic individuals (who can be identified as those with circulating allergen-specific IgE) have clinical allergic disease (equating to 15–20% of the UK population). Allergy accounts for up to one-third of school absences because of chronic illness. Other allergic disorders include allergic rhinitis (hay fever), allergic eczema, bee and wasp venom allergy and some forms of food allergy, urticaria and angio-oedema.

Treatment

Avoidance is the first-line of therapy.

image Antihistamines are effective for many immediate hypersensitivity reactions (but have no role in the treatment of asthma). A monoclonal antibody that mops up serum IgE (omalizumab) is also used (see p. 831).

image Corticosteroids have several well-identified modifying actions in the allergic process: production of prostaglandin and leukotriene mediators is suppressed, inflammatory cell recruitment and migration is inhibited and vasoconstriction leads to reduced cell and fluid leakage from the vasculature.

image Cysteinyl leukotriene receptor antagonists (LTRAs) inhibit leukotrienes (LTs) by blocking the type I receptor (e.g. montelukast, used in asthma, particularly aspirin induced).

image Omalizumab is a monoclonal antibody that binds IgE. It is used in severe asthma that cannot be controlled with a corticosteroid plus a long-acting β2 agonist. Treatment must be initiated in a specialist centre with experience of treating severe persistent asthma.

image Desensitization (allergen immunotherapy) can be used. The principle is that allergy can be prevented by inoculation by giving the allergen in a controlled way. It is indicated for disorders in which the hypersensitivity is IgE mediated, e.g. life-threatening allergy to insect stings, drug allergy and allergic rhinitis. An induction course of subcutaneous injections of increasing doses of the allergen extract, given once every 1–2 weeks, is followed by maintenance injections monthly for 2–3 years. A systematic review of 51 published randomized placebo-controlled clinical trials, enrolling a total of nearly 3000 participants, showed a low risk of adverse events with consistent clinical benefit. From an immunological viewpoint, desensitization seems capable of modifying the allergic response at several levels (Table 3.19). Sublingual allergen immunotherapy (using grass pollen extract tablets of Phl p 5 from Timothy grass; see p. 810) is used in hay fever that has not responded to anti-allergic drugs (the first dose is given under medical supervision).

Table 3.19 Mechanism of action of desensitization for allergy

Probable mechanism Effect

IgG blocking antibodies

During repeated exposure to desensitizing allergen, IgG class antibodies develop (especially IgG4 subclass); these compete with the pathogenic IgE for allergen binding, and/or prevent IgE-allergen complexes binding to mast cell high-affinity IgE receptors

Regulation

Exposure to repeated desensitizing allergen induces Treg cells which recognize allergen but invoke regulatory immune responses, dampening down migration, infiltration and inflammation

Immune deviation

A shift away from Th2- to Th1-producing CD4 cells results in the generation of cytokines (e.g. IFN-γ) which are inhibitory to IgE production

Anaphylaxis

Anaphylaxis is a serious allergic reaction that is rapid in onset and may cause death. It arises as an acute, generalized IgE-mediated immune reaction involving specific antigen, mast cells and basophils. The reaction requires priming by the allergen, followed by re-exposure. To provoke anaphylaxis, the allergen must be systemically absorbed, either after ingestion or parenteral injection. A range of allergens that provoke anaphylaxis has been identified (Table 3.20).

Table 3.20 Sources of allergens known to provoke anaphylaxis

Foods

Nuts: peanuts (protein-arachis hypogaea Ara h 1–3), Brazil, cashew

Shellfish: shrimp (allergen Met e 1), lobster

Dairy products

Egg

More rarely: citrus fruits, mango, strawberry, tomato

Venoms

Wasps, bees, yellow-jackets, hornets

Medications

Antisera (tetanus, diphtheria), dextran, latex, some antibiotics

Anaphylaxis is rare, and the symptom/sign constellation ranges from widespread urticaria to cardiovascular collapse, laryngeal oedema, airway obstruction and respiratory arrest leading to death:

Central to the pathogenesis of anaphylaxis is the activation of mast cells and basophils, with systemic release of some mediators and generation of others. The initial symptoms may appear innocuous: tingling, warmth and itchiness. The ensuing effects on the vasculature give vasodilatation and oedema. The consequence of these may be no more than a generalized flush, with urticaria and angio-oedema. More serious sequelae are hypotension, bronchospasm, laryngeal oedema and cardiac arrhythmia or infarction. Death may occur within minutes.

Serum platelet-activating factor (PAF) levels correlate directly with the severity of anaphylaxis whereas PAF acetylhydrolase (the enzyme that inactivates PAF) correlated inversely and was significantly lower in peanut sensitive patients with fatal anaphylactic reactions.

Autoimmune disease

Autoimmunity is when the immune response turns against self, i.e. recognizes ‘self’ antigens. The vast array of possible TCRs and antibodies that can be generated by the host make it highly probable that at least a small proportion can recognize self (i.e. are autoreactive). Moreover, a degree of autoreactivity is physiological – the TCR is designed to interact both with the peptide epitope in the HLA molecule binding groove, and with the HLA molecule itself.

The critical event in the development of autoimmune disease is when T and B lymphocytes bearing these receptors become activated. The following are the major checkpoints that the immune system has in place to prevent this:

Autoimmune diseases affect 5% of the population at some stage of their life.

Failure of Checkpoint 2, regulatory T lymphocytes

An example of Treg failure is the defect in the gene encoding Foxp3, a critical transcription factor in Tregs (see p. 61) that leads to IPEX (see p. 61). IPEX is very rare, but it serves to indicate how Treg defects can lead to autoimmune disease. Laboratory studies in this area are revealing subtle Treg defects in several autoimmune diseases (e.g. type 1 diabetes, multiple sclerosis, rheumatoid arthritis).

Failure of Checkpoint 3, CD4 T lymphocyte activation against an autoantigen (or its mimic)

For an autoimmune disease to develop, there must be presentation of autoantigens to a naive, potentially autoreactive CD4 T lymphocyte by activated DCs. This could happen in one of two ways:

It is unlikely that for the common autoimmune diseases (Table 3.21) there is a ‘single checkpoint’ explanation. Rather, it is likely that multiple subtle defects, at various checkpoints, are at play.

Table 3.21 Some autoimmune diseases and their autoantigens

Disease Antigens

Addison disease

21 α-hydroxylase

Goodpasture’s syndrome

Type IV collagen (located in GBM)

Graves’ thyroiditis

Thyroid-stimulating hormone receptor

Hashimoto’s thyroiditis

Thyroid peroxidase, thyroglobulin

Multiple sclerosis

Myelin basic protein

Myelin oligodendrocyte glycoprotein

Myasthenia gravis

Acetylcholine receptor

Pemphigus vulgaris

Desmoglein-3

Pernicious anaemia

H+/K+-ATPase, intrinsic factor

Polymyositis/dermatomyositis

tRNA synthases

Primary biliary cirrhosis

Pyruvate dehydrogenase complex

Rheumatoid arthritis

Citrullinated cyclic peptide, IgM

Scleroderma

Topoisomerase

Sjögren’s syndrome

Ro/La ribonuclear proteins

Systemic lupus erythematosus

Sm/RNP, Ro/La (SS-A/SS-B), histone and native DNA

Type 1 diabetes

Proinsulin, glutamic acid decarboxylase, IA-2, ZNT8

Vitiligo

Pigment cell antigens

Wegener’s granulomatosis (Granulomatosis with polyangiitis).

Neutrophil proteinase 3

GBM, glomerular basement membrane.

Mechanisms of tissue damage in autoimmune disease

Figure 3.15 illustrates potential mechanisms of immune damage in autoimmune disease.

Immune-based therapies

Manipulating the immune response in a therapeutic setting has seen many successes, as evidenced by the control of organ rejection in clinical transplantation through targeted immunosuppression (Table 3.22). Monoclonal antibodies offer the opportunity to neutralize the unwanted effects of cytokines, or to direct immune responses, drugs, toxins or irradiation against a specific target, whether it be a tumour cell or an immune cell involved in a damaging autoimmune response. Natural antiviral mediators, such as the interferons, are already in the clinic as therapies for, amongst other things, chronic viral infection.

Immunosuppressive drugs

Glucocorticosteroids (cortisone, hydrocortisone, prednisone and prednisolone) are the most commonly used steroids and have a variety of effects on immune function, including:

Ciclosporin, tacrolimus and rapamycin (sirolimus) have similar effects on T lymphocyte function. Ciclosporin and tacrolimus are calcineurin inhibitors and inhibit Ca2+-dependent second messenger signals in T lymphocytes following activation via TCR. By contrast, sirolimus achieves a similar effect but acts at the level of post-activation events in the nucleus.

Purine analogues such as azathioprine are also frequently used as anti-inflammatory drugs in conjunction with steroids and act by inhibiting DNA synthesis in dividing adaptive immune cells. Similar in mode of action, but more powerful, is mycophenolate mofetil (MMF).

Alkylating agents that interfere with DNA synthesis, such as cyclophosphamide, are also used for immunosuppression.