Cancer genetics

Published on 09/04/2015 by admin

Filed under Hematology, Oncology and Palliative Medicine

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5 Cancer genetics

Introduction

The last two decades have seen rapid expansion in our understanding of the genetic origins of cancers. Between 5–10% of cancers are due to inheritance of alterations in genes that confer a high life-time risk of certain malignancies, such as breast, colorectal cancer (see Table 5.1), and very rare tumours.

Table 5.1 The risk of common cancers associated with inherited cancer syndromes

Tumour site Genes associated with relative risk of >5.0 Cancer syndrome
Breast BRCA1/2 Hereditary breast/ovarian cancer syndrome
TP53 Li–Fraumeni syndrome
PTEN Cowden syndrome
CDH1 Hereditary diffuse gastric cancer syndrome
STK11 Peutz–Jeghers syndrome
Colorectal APC Familial adenomatous polyposis
MUTYH
MLH1 Lynch syndrome (hereditary non-polyposis colon cancer)
MSH2
MSH6
PMS2
Pancreatic BRCA2 Hereditary breast/ovarian cancer syndrome
BRCA1
MSH2 Lynch syndrome (hereditary non-polyposis colon cancer)
MLH1
STK11 Peutz–Jeghers syndrome
TP53 Li–Fraumeni syndrome
PRSS1 Hereditary pancreatitis
SPINK1 Familial atypical mole malignant melanoma syndrome (FAMMM)
CDKN2A
Prostate BRCA2 Hereditary breast/ovarian cancer syndrome
Endometrial MLH1 Hereditary non-polyposis colon cancer
MSH2
MSH6
PMS2
Ovarian BRCA1/2 Hereditary breast/ovarian cancer syndrome
MLH1 Lynch syndrome
MSH2

Most of these so-called ‘hereditary cancer predisposition syndromes’ are due to mutations within a single allele (copy) of a tumour suppressor gene inherited in an autosomal dominant fashion.

Mechanisms of inherited cancer

Tumorigenesis involves contributions from two classes of genes. Oncogenes control cell growth and proliferation under normal circumstances, but once inappropriately activated or overexpressed can promote rapid clonal expansion. Tumour suppressor genes normally inhibit abnormal cell proliferation; reduced expression of these genes can result in uncontrolled cell division. Almost all hereditary cancer predisposition syndromes are due to the inheritance of a germline mutation in a tumour suppressor gene. The inherited mutation inactivates one copy of the gene and the subsequent development of a mutation in the remaining ‘normal’ copy of the gene results in failure of a cell to produce the tumour suppressor protein (Knudson ‘two-hit’ hypothesis – see Figure 5.1).

The concept of heritable cancer predisposition was originally developed from observations of an earlier age of onset of retinoblastoma in patients with a positive family history.

Inheritance of two alleles each carrying a mutation within the same tumour suppression gene is extremely rare and can result in a different and more severe phenotype than monoallelic mutation inheritance. For example, inheritance of one BRCA2 mutation from a single parent is associated with breast/ovarian cancer whilst biallelic BRCA2 mutations are a cause of Fanconi’s anaemia.

Genetic counselling

It is essential that any individual considering undergoing genetic screening for an inherited cancer predisposition syndrome receives expert counselling prior to testing and on receiving their result. Patients must be advised that failure to detect a mutation does not always mean that no mutation is present and that further results may become available in the future when genetic testing may become more sophisticated. The roles of genetic counselling are summarized in Box 5.1.

The remainder of this chapter will look in more detail at inherited breast and colorectal cancer, and the most common cancer predisposition syndromes.

Inherited breast cancer

Studies indicate that 20–30% of breast cancer patients report a positive family history of this condition (Box 5.2). Approximately 5% of all breast cancer cases are thought to be due to highly penetrant autosomal dominant cancer predisposition syndromes (Figure 5.2). The two most frequent highly penetrant breast cancer susceptibility genes are BRCA1 and BRCA2 where in some families lifetime penetrance for breast cancer can reach 80% but penetrance is clearly modified by other genetic and environmental factors. Much rarer syndromes including Li–Fraumeni, Cowden, Peutz–Jeghers and hereditary diffuse gastric cancer (HDGC) syndromes can be recognized either by other clinical manifestations or by the pattern of cancers in the family (Table 5.2). Lifetime breast cancer risk for carriers of these mutations is in the order of 20–100%. It is likely that most familial clusters of breast cancer are the consequence of multiple low penetrance cancer susceptibility genes acting in conjunction with environmental factors. Within the last few years a number of large case-control studies have identified variants in DNA repair genes (e.g. CHEK2, ATM, BRIP1 and PALB2), which double the risk of breast cancer. The population prevalence of these variants seems to be in the order of 1–5%.

Hereditary breast/ovarian cancer syndrome

Inheritance Autosomal dominant Autosomal dominant Lifetime risk of breast cancer (females) 40–80% 40–80% Pathological features of breast tumours Typically high grade with lymphocytic infiltrate and pushing tumour margins, ER, PR, HER-2 negative No typical phenotype Lifetime risk of ovarian cancer 40–60% 10–20% Other associated tumours Pancreatic

Inherited colorectal cancer

Approximately 5% of cases of colorectal cancer are due to an underlying hereditary cancer syndrome, with an increased representation amongst young colorectal cancer patients. Any features listed in Box 5.4 should raise the suspicion of a familial colorectal cancer syndrome.

Most familial cases are due to either hereditary non-polyposis colon cancer (HNPCC), also known as Lynch syndrome, which accounts for an estimated 2–3% of all colorectal cancers or familial adenomatous polyposis coli (FAP), which accounts for less than 1% of all colorectal cancers. The key features of these two syndromes are summarized in Table 5.4.

Table 5.4 Clinical features of FAP and Lynch syndrome

Clinical syndrome Familial adenomatous polyposis (FAP) Lynch syndrome
Incidence 1 in 8000 1 in 1700
Clinical features Extensive gastrointestinal adenomatous polyps from young age with extremely high rate of malignant transformation. High risk of early onset colon cancer associated with elevated risk of distinct spectrum of extra-colonic tumours.
Risk of colon cancer

70–90% Extra-colonic tumours Inheritance Autosomal dominant Autosomal dominant Genes APC Pathogenesis Activation of Wnt pathway and chromosomal instability (see text) Defective DNA mismatch repair Pathological features Adenomatous polyposis Microsatellite instability

In addition, an increased risk of gastrointestinal cancer is also observed in Peutz–Jeghers syndrome, caused by the inheritance of mutations in STK11.

Familial adenomatous polyposis

Hereditary non-polyposis colorectal cancer

Diagnosis

The National Comprehensive Cancer Network guidelines currently state that a clinical diagnosis of HNPCC requires the following minimum criteria, based on the Amsterdam II criteria (Box 5.5).

Analysis of tumour tissue for high microsatellite instability (MSI), using a panel of five or six polymorphic markers, will be positive in more than 80% of patients fulfilling the Amsterdam criteria. Patients with evidence of MSI should be offered genetic screening for germ line mutations of hMLH1, hMSH2 and MSH6. Alternatively, immunohistochemical staining of colorectal tumours for the hMLH1, hSMH2 and hSMH6 proteins has been shown to be highly sensitive and specific in predicting an underlying MMR gene defect. The Bethesda guidelines can be used to identify patients with colorectal cancer where there is young onset or less striking familial clustering of cancers and in whom testing tumour samples for MSI can help direct genetic counselling and testing since less than 15% of sporadic tumours display MSI, but the vast majority of HNPCC related tumours show this phenomenon.

Li–Fraumeni syndrome

First described in 1969, classic Li–Fraumeni syndrome (LFS), is a rare cancer susceptibility syndrome characterized by an autosomal dominant pattern of diverse neoplasms in children and young adults with a predominance of soft tissue sarcomas, osteosarcoma, and breast cancer and an excess of brain tumours, leukaemia, and adrenocortical carcinomas (see Box 5.6 for definition of classic LFS). Many additional tumours have also been reported in LFS families (see Table 5.6).

Table 5.6 Component tumours of classic Li–Fraumeni syndrome and other tumours associated with LFS

Classic Li–Fraumeni component tumours Other tumours associated with LFS

Retinoblastoma

Retinoblastoma is a rare primary malignant tumour of the retina. Unilateral tumours usually present before the age of 4 years (median age 18 months) whilst bilateral tumours present even earlier (median age 13 months). Only 5–10% of patients have a positive family history. Second primary tumours are seen in a quarter of surviving patients with hereditary retinoblastoma, occurring up to 40 years after the initial event. These include sarcomas, melanoma, brain tumours, breast cancers and leukaemia.

Von Hippel–Lindau syndrome

Von Hippel–Lindau (VHL) is a rare hereditary cancer syndrome consisting of haemangioblastomas of the retina and central nervous system (particularly cerebellar, medullary and spinal sites), associated with phaeochromocytomas and clear cell renal carcinomas. It is inherited in an autosomal dominant fashion. Hereditary phaeochromocytomas present earlier and are more frequently multiple than sporadic phaeochromocytomas but are less likely to undergo malignant transformation. Renal tumours occur in 25% of VHL families, presenting at a median age of 45 years. They are also more likely to be bilateral than sporadic renal carcinomas.

Clinical management

Screening for VHL tumours should be as set out in Table 5.8. Pre-natal and pre-implantation genetic diagnosis is now available for VHL when a mutation has been identified in a family.

Table 5.8 Onset of clinical features of VHL and recommended surveillance

Age (years) Clinical feature Surveillance
1–10 Retinal angiomas Retinal screening (from age 5)
11–20

21–30 31–40 41–50 Renal carcinomas Renal imaging

Multiple neuroendocrine neoplasia syndromes

The multiple endocrine neoplasia (MEN) syndromes are autosomal dominant disorders characterized by the development of multiple benign and malignant tumours of endocrine glands. The key clinical features of MEN1, MEN2A and MEN2B are summarized in Table 5.9.